WormBase Tree Display for Gene: WBGene00001605
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| WBGene00001605 | Evidence | CGC_data_submission | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | gln-4 | ||||||||
| Sequence_name | T25C8.3 | |||||||||
| Molecular_name | T25C8.3 | |||||||||
| Other_name | CELE_T25C8.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | gln-4 | |||||||||
| DB_info | Database | AceView | gene | 3O688 | ||||||
| WormQTL | gene | WBGene00001605 | ||||||||
| NDB | locus_tag | CELE_T25C8.3 | ||||||||
| NCBI | gene | 13191819 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 09 Mar 2005 17:09:58 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | gln | |||||||||
| Allele (30) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00001603 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Enriched in germ line and in male based on proteomic and RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on RNA-seq and microarray studies. Is affected by thirteen chemicals including methylmercuric chloride; manganese chloride; and stavudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T25C8.3:wp141 | ||||||||
| Corresponding_pseudogene | T25C8.3 | |||||||||
| Other_sequence | Oden_isotig23586 | |||||||||
| GR14296 | ||||||||||
| ASC32126_1 | ||||||||||
| Tcir_isotig02490 | ||||||||||
| HC02771 | ||||||||||
| AE00568 | ||||||||||
| NBC03854_1 | ||||||||||
| FG619813.1 | ||||||||||
| ACC06900_1 | ||||||||||
| HCC00354_1 | ||||||||||
| Hbac_isotig01600 | ||||||||||
| CR00021 | ||||||||||
| EX538051.1 | ||||||||||
| ES414263.1 | ||||||||||
| ES409855.1 | ||||||||||
| GRC00463_1 | ||||||||||
| EX543970.1 | ||||||||||
| FE909904.1 | ||||||||||
| AS14818 | ||||||||||
| TX00489 | ||||||||||
| Dviv_isotig10537 | ||||||||||
| Dviv_isotig10538 | ||||||||||
| Tcol_isotig18295 | ||||||||||
| CR00035 | ||||||||||
| GW406767.1 | ||||||||||
| ES410658.1 | ||||||||||
| EX008195.1 | ||||||||||
| GW406818.1 | ||||||||||
| ES410439.1 | ||||||||||
| PSC02383_1 | ||||||||||
| EV849998.1 | ||||||||||
| DA03578 | ||||||||||
| EX012621.1 | ||||||||||
| Acan_isotig03612 | ||||||||||
| Tcir_isotig02489 | ||||||||||
| HCC07138_1 | ||||||||||
| ASC07437_1 | ||||||||||
| NB09653 | ||||||||||
| FC540170.1 | ||||||||||
| ES743398.1 | ||||||||||
| Acan_isotig03611 | ||||||||||
| XI00970 | ||||||||||
| AS03114 | ||||||||||
| DVC00464_1 | ||||||||||
| FC542922.1 | ||||||||||
| AI317907.1 | ||||||||||
| HC01092 | ||||||||||
| AM744524.1 | ||||||||||
| JO467854.1 | ||||||||||
| Dviv_isotig01950 | ||||||||||
| CRC11238_1 | ||||||||||
| TDC02524_1 | ||||||||||
| ACC16902_1 | ||||||||||
| OVC01353_1 | ||||||||||
| Dviv_isotig00290 | ||||||||||
| HC00651 | ||||||||||
| AS05615 | ||||||||||
| CJC10899_1 | ||||||||||
| Dviv_isotig10539 | ||||||||||
| EX551040.1 | ||||||||||
| EX540983.1 | ||||||||||
| ACC17840_1 | ||||||||||
| ACC33542_1 | ||||||||||
| PT00246 | ||||||||||
| JI172473.1 | ||||||||||
| Oden_isotig22554 | ||||||||||
| HBC02071_1 | ||||||||||
| AE03029 | ||||||||||
| ES739645.1 | ||||||||||
| JI173745.1 | ||||||||||
| GW411018.1 | ||||||||||
| Experimental_info | Microarray_results | SMD_T25C8.3 | ||||||||
| SMD_Y76A2C.A | ||||||||||
| 189946_at | ||||||||||
| A_12_P134030 | ||||||||||
| Aff_T25C8.3 | ||||||||||
| GPL19516_CGZ0012395 | ||||||||||
| GPL19516_CGZ0036779 | ||||||||||
| GPL21109_Cat_T25C8.3 | ||||||||||
| GPL21109_T25C8.3 | ||||||||||
| GPL3518_CE18965 | ||||||||||
| Expression_cluster (66) | ||||||||||
| Map_info | Map | III | Position | 21.2828 | Error | 0.003537 | ||||
| Positive | Positive_clone | T25C8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
