WormBase Tree Display for Gene: WBGene00001662

WBGene00001662 Evidence: Accession_evidence: EMBL AY052771
  SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: CGC_name: gop-3 Person_evidence: WBPerson247
      Sequence_name: C34E10.1
      Molecular_name: C34E10.1
        C34E10.1.1
        CE26880
      Other_name: C34E10.k Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_C34E10.1 Accession_evidence: NDB BX284603
      Public_name: gop-3
    DB_info: Database: AceView gene 3G351
        WormQTL gene WBGene00001662
        WormFlux gene WBGene00001662
        NDB locus_tag CELE_C34E10.1
        Panther gene CAEEL|WormBase=WBGene00001662|UniProtKB=P46576
          family PTHR12815
        NCBI gene 175723
        RefSeq protein NM_065718.8
        SwissProt UniProtAcc P46576
        TREEFAM TREEFAM_ID TF106126
        UniProt_GCRP UniProtAcc P46576
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gop
    Allele (40)
    RNASeq_FPKM (74)
    GO_annotation: 00046490
      00046491
      00046492
      00046493
      00046494
      00046495
      00109211
    Contained_in_operon: CEOP3272
    Ortholog: WBGene00072886 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00040026 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144061 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00108178 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00119813 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00069183 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00222839 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5235 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5626 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6709 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19756 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3698 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20838 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12172 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2681 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1582 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g25430 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7832 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00974.g15177 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-gop-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12536 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_04137.g32174 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_07202.g37487 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06185 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008453 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12940 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21737 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30023810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7677 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00214680 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00249164 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00293650 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004971 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0033989 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-806 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041114-30 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:24276 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1915903 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1303219 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: gop-3 encodes an ortholog of the mammalian CGI-51 (comparative gene identification-51) proteins that display a high degree of similarity to the Haemophilus influenza D15 protective surface antigen; loss of gop-3 activity via large-scale RNAi screens indicates that GOP-3 is required for embryonic and larval development, as well as for normal postembryonic growth rates. Paper_evidence: WBPaper00004403
            WBPaper00004424
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in mitochondrial respiratory chain complex assembly and protein insertion into mitochondrial outer membrane. Predicted to be located in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in non-alcoholic fatty liver disease. Is an ortholog of human SAMM50 (SAMM50 sorting and assembly machinery component). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080208 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:24276)
  Molecular_info: Corresponding_CDS: C34E10.1
    Corresponding_transcript: C34E10.1.1
    Other_sequence (36)
    Associated_feature: WBsf658923
      WBsf224895
      WBsf224896
  Experimental_info: RNAi_result (22)
    Expr_pattern: Expr1019001
      Expr1030995
      Expr1145896
      Expr2012175
      Expr2030411
    Drives_construct: WBCnstr00036793
    Construct_product: WBCnstr00036793
    Microarray_results (26)
    Expression_cluster (98)
    Interaction (45)
  Map_info: Map: III Position: -1.85413 Error: 0.000487
    Positive: Positive_clone: C34E10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00041771
    WBPaper00047580
    WBPaper00054664
    WBPaper00055090
    WBPaper00062642
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene