WormBase Tree Display for Gene: WBGene00001665
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| WBGene00001665 | SMap | S_parent | Sequence | E02C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gpa-3 | Person_evidence | WBPerson625 | |||||
| Sequence_name | E02C12.5 | ||||||||
| Molecular_name | E02C12.5a | ||||||||
| E02C12.5a.1 | |||||||||
| CE51492 | |||||||||
| E02C12.5b | |||||||||
| Other_name | CELE_E02C12.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | gpa-3 | ||||||||
| DB_info | Database | AceView | gene | 5J838 | |||||
| WormQTL | gene | WBGene00001665 | |||||||
| WormFlux | gene | WBGene00001665 | |||||||
| NDB | locus_tag | CELE_E02C12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001665|UniProtKB=P28052 | |||||||
| family | PTHR10218 | ||||||||
| NCBI | gene | 179319 | |||||||
| RefSeq | protein | NM_001322582.3 | |||||||
| NR_136369.1 | |||||||||
| SwissProt | UniProtAcc | P28052 | |||||||
| UniProt_GCRP | UniProtAcc | P28052 | |||||||
| RNAcentral | URSid | URS0000A41A80 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gpa | ||||||||
| Allele (44) | |||||||||
| Legacy_information | [C.elegansII] pk12, pk35. Tc1 insertion, also excision derivatives. No obvious phenotype, some reduction in dauer formation, stronger with gpa-2(O). Cloned: 48% identity to GPA-1; gpa-3:lacZ expressed in amphid and phasmid neurons. [Lochrie et al. 1991; PS; NL] | ||||||||
| Strain | WBStrain00028900 | ||||||||
| WBStrain00028902 | |||||||||
| WBStrain00028996 | |||||||||
| WBStrain00007863 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (41) | |||||||||
| Ortholog (47) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Concise_description | gpa-3 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that affects dauer formation, water-soluble chemoattraction and chemoaversion, and volatile chemoattraction; it is expressed in amphid and phasmid neurons and some interneurons. | Curator_confirmed | WBPerson48 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables olfactory receptor binding activity. Involved in several processes, including cellular response to cGMP; regulation of gene expression; and signal transduction. Located in axon; neuronal cell body; and non-motile cilium. Expressed in AWAL; AWAR; AWCL; and AWCR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | E02C12.5a | |||||||
| Corresponding_CDS_history | E02C12.5:wp252 | ||||||||
| Corresponding_transcript | E02C12.5b | ||||||||
| E02C12.5a.1 | |||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf1000874 | ||||||||
| WBsf1000875 | |||||||||
| WBsf1020159 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00112368 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043590 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012637 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027600 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr540 | ||||||||
| Expr3069 | |||||||||
| Expr15374 | |||||||||
| Expr1018893 | |||||||||
| Expr1147582 | |||||||||
| Expr2012192 | |||||||||
| Expr2030428 | |||||||||
| Drives_construct | WBCnstr00001685 | ||||||||
| WBCnstr00004646 | |||||||||
| WBCnstr00004647 | |||||||||
| WBCnstr00012430 | |||||||||
| WBCnstr00022450 | |||||||||
| Construct_product | WBCnstr00001685 | ||||||||
| WBCnstr00004646 | |||||||||
| WBCnstr00004647 | |||||||||
| WBCnstr00005840 | |||||||||
| WBCnstr00012430 | |||||||||
| WBCnstr00022450 | |||||||||
| WBCnstr00040350 | |||||||||
| WBCnstr00040351 | |||||||||
| Antibody | WBAntibody00000770 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (46) | |||||||||
| Anatomy_function | WBbtf0864 | ||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| Map_info | Map | V | Position | 2.01503 | Error | 0.001141 | |||
| Positive | Positive_clone | E02C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| PS#14A3 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (92) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
