WormBase Tree Display for Gene: WBGene00001727
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| WBGene00001727 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T05C3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-18 | Person_evidence | WBPerson83 | |||||
| Sequence_name | T05C3.4 | ||||||||
| Molecular_name | T05C3.4 | ||||||||
| T05C3.4.1 | |||||||||
| CE39030 | |||||||||
| Other_name | CELE_T05C3.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-18 | ||||||||
| DB_info | Database | AceView | gene | 5F960 | |||||
| WormQTL | gene | WBGene00001727 | |||||||
| WormFlux | gene | WBGene00001727 | |||||||
| NDB | locus_tag | CELE_T05C3.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001727|UniProtKB=O16301 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 353441 | |||||||
| RefSeq | protein | NM_182425.4 | |||||||
| TREEFAM | TREEFAM_ID | TF315611 | |||||||
| TrEMBL | UniProtAcc | O16301 | |||||||
| UniProt_GCRP | UniProtAcc | O16301 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (54) | |||||||||
| Strain | WBStrain00032819 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (15) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-18 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich region, and a C-terminal Ground-like(Grl) domain; the Grl domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Enriched in GABAergic neurons and accessory cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; glp-1; and let-60 based on microarray and RNA-seq studies. Is affected by five chemicals including methylmercuric chloride; Rifampin; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05C3.4 | |||||||
| Corresponding_CDS_history | T05C3.4:wp93 | ||||||||
| T05C3.4:wp105 | |||||||||
| T05C3.4:wp147 | |||||||||
| Corresponding_transcript | T05C3.4.1 | ||||||||
| Other_sequence | ACC28335_1 | ||||||||
| FC552751.1 | |||||||||
| Associated_feature | WBsf652627 | ||||||||
| WBsf668952 | |||||||||
| WBsf1019651 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052500 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018223 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4457 | ||||||||
| Expr1015793 | |||||||||
| Expr1156124 | |||||||||
| Expr2012252 | |||||||||
| Expr2030488 | |||||||||
| Drives_construct | WBCnstr00012022 | ||||||||
| WBCnstr00036734 | |||||||||
| Construct_product | WBCnstr00036734 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction | WBInteraction000343948 | ||||||||
| WBInteraction000346767 | |||||||||
| Map_info | Map | V | Position | -1.81907 | Error | 0.010657 | |||
| Positive | Positive_clone | T05C3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00063715 | |||||||||
| WBPaper00064105 | |||||||||
| WBPaper00065979 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
