WormBase Tree Display for Gene: WBGene00001978
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| WBGene00001978 | SMap | S_parent | Sequence | R13H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hmp-1 | Person_evidence | WBPerson498 | |||||
| Sequence_name | R13H4.4 | ||||||||
| Molecular_name (19) | |||||||||
| Other_name | CELE_R13H4.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | hmp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hmp | ||||||||
| Allele (102) | |||||||||
| Legacy_information | [C.elegansII] Mutations zygotic lethal, arrest at 1.25-1.5 fold stage with lumps in dorsal hypoderm. Cloned: encodes probable alpha-catenin homolog. [JJ] | ||||||||
| Strain | WBStrain00001826 | ||||||||
| WBStrain00022476 | |||||||||
| WBStrain00024213 | |||||||||
| WBStrain00030631 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00000832 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00000942 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | hmp-1 encodes an alpha-catenin; during development, hmp-1 activity is required for proper enclosure and elongation of the embryo; HMP-1 localizes to hypodermal adherens junctions. | Paper_evidence | WBPaper00003046 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 11 Jun 2008 00:00:00 | ||||||||
| Automated_description | Enables actin filament binding activity and beta-catenin binding activity. Involved in several processes, including cortical actin cytoskeleton organization; embryonic morphogenesis; and regulation of actin cytoskeleton organization. Located in adherens junction and apical junction complex. Part of catenin complex. Expressed in several structures, including distal tip cell; germ cell; intestinal cell; neuroblasts; and pharyngeal cell. Human ortholog(s) of this gene implicated in several diseases, including arrhythmogenic right ventricular dysplasia 13; cervix uteri carcinoma in situ; and urinary system cancer (multiple). Is an ortholog of human CTNNA2 (catenin alpha 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8991 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||
| DOID:11054 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||||
| DOID:0090131 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2510) | ||||||
| DOID:2671 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||||
| DOID:0060864 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||||
| DOID:0110084 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2511) | ||||||
| DOID:4450 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||||
| DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||||
| DOID:3457 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2509) | ||||||
| Molecular_info | Corresponding_CDS | R13H4.4a | |||||||
| R13H4.4b | |||||||||
| R13H4.4c | |||||||||
| R13H4.4d | |||||||||
| R13H4.4e | |||||||||
| R13H4.4f | |||||||||
| Corresponding_transcript | R13H4.4a.1 | ||||||||
| R13H4.4b.1 | |||||||||
| R13H4.4c.1 | |||||||||
| R13H4.4d.1 | |||||||||
| R13H4.4e.1 | |||||||||
| R13H4.4f.1 | |||||||||
| R13H4.4f.2 | |||||||||
| Other_sequence (49) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Chronogram912 | ||||||||
| Expr6534 | |||||||||
| Expr9341 | |||||||||
| Expr13047 | |||||||||
| Expr14677 | |||||||||
| Expr1011130 | |||||||||
| Expr1031148 | |||||||||
| Expr1155584 | |||||||||
| Expr2012529 | |||||||||
| Expr2030768 | |||||||||
| Drives_construct | WBCnstr00002622 | ||||||||
| WBCnstr00004619 | |||||||||
| WBCnstr00006235 | |||||||||
| WBCnstr00007873 | |||||||||
| WBCnstr00008029 | |||||||||
| WBCnstr00009117 | |||||||||
| WBCnstr00020495 | |||||||||
| WBCnstr00036545 | |||||||||
| Construct_product | WBCnstr00020495 | ||||||||
| WBCnstr00036545 | |||||||||
| Antibody | WBAntibody00000167 | ||||||||
| WBAntibody00001450 | |||||||||
| WBAntibody00002691 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (117) | |||||||||
| WBProcess | WBbiopr:00000017 | ||||||||
| Map_info | Map | V | Position | 3.46447 | Error | 0.012439 | |||
| Positive | Positive_clone | R13H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4408 | |||||||
| 5036 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003046 | ||||||||
| WBPaper00003200 | |||||||||
| WBPaper00003945 | |||||||||
| WBPaper00003991 | |||||||||
| WBPaper00004214 | |||||||||
| WBPaper00004237 | |||||||||
| WBPaper00004438 | |||||||||
| WBPaper00004493 | |||||||||
| WBPaper00004510 | |||||||||
| WBPaper00004885 | |||||||||
| WBPaper00004961 | |||||||||
| WBPaper00004964 | |||||||||
| WBPaper00005256 | |||||||||
| WBPaper00005372 | |||||||||
| WBPaper00005576 | |||||||||
| WBPaper00005653 | |||||||||
| WBPaper00005843 | |||||||||
| WBPaper00005969 | |||||||||
| WBPaper00005972 | |||||||||
| WBPaper00005975 | |||||||||
| WBPaper00006149 | |||||||||
| WBPaper00006196 | |||||||||
| WBPaper00006199 | |||||||||
| WBPaper00006400 | |||||||||
| WBPaper00006422 | |||||||||
| WBPaper00006462 | |||||||||
| WBPaper00006463 | |||||||||
| WBPaper00010458 | |||||||||
| WBPaper00011307 | |||||||||
| WBPaper00011358 | |||||||||
| WBPaper00011479 | |||||||||
| WBPaper00011597 | |||||||||
| WBPaper00012320 | |||||||||
| WBPaper00012424 | |||||||||
| WBPaper00012635 | |||||||||
| WBPaper00012691 | |||||||||
| WBPaper00015185 | |||||||||
| WBPaper00015722 | |||||||||
| WBPaper00017256 | |||||||||
| WBPaper00017732 | |||||||||
| WBPaper00017733 | |||||||||
| WBPaper00017734 | |||||||||
| WBPaper00017984 | |||||||||
| WBPaper00018030 | |||||||||
| WBPaper00018117 | |||||||||
| WBPaper00018753 | |||||||||
| WBPaper00018764 | |||||||||
| WBPaper00018880 | |||||||||
| WBPaper00019575 | |||||||||
| WBPaper00021712 | |||||||||
| WBPaper00022212 | |||||||||
| WBPaper00022650 | |||||||||
| WBPaper00023815 | |||||||||
| WBPaper00024453 | |||||||||
| WBPaper00024817 | |||||||||
| WBPaper00025490 | |||||||||
| WBPaper00025913 | |||||||||
| WBPaper00025917 | |||||||||
| WBPaper00025983 | |||||||||
| WBPaper00026609 | |||||||||
| WBPaper00026656 | |||||||||
| WBPaper00027233 | |||||||||
| WBPaper00027244 | |||||||||
| WBPaper00027245 | |||||||||
| WBPaper00027821 | |||||||||
| WBPaper00029033 | |||||||||
| WBPaper00029128 | |||||||||
| WBPaper00030628 | |||||||||
| WBPaper00031082 | |||||||||
| WBPaper00031185 | |||||||||
| WBPaper00032115 | |||||||||
| WBPaper00032465 | |||||||||
| WBPaper00034897 | |||||||||
| WBPaper00034904 | |||||||||
| WBPaper00036205 | |||||||||
| WBPaper00036330 | |||||||||
| WBPaper00036734 | |||||||||
| WBPaper00036825 | |||||||||
| WBPaper00036917 | |||||||||
| WBPaper00037766 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039779 | |||||||||
| WBPaper00039809 | |||||||||
| WBPaper00041277 | |||||||||
| WBPaper00041857 | |||||||||
| WBPaper00042762 | |||||||||
| WBPaper00042769 | |||||||||
| WBPaper00042774 | |||||||||
| WBPaper00046645 | |||||||||
| WBPaper00046751 | |||||||||
| WBPaper00047348 | |||||||||
| WBPaper00048639 | |||||||||
| WBPaper00049280 | |||||||||
| WBPaper00049309 | |||||||||
| WBPaper00050944 | |||||||||
| WBPaper00052964 | |||||||||
| WBPaper00053231 | |||||||||
| WBPaper00053735 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056291 | |||||||||
| WBPaper00056323 | |||||||||
| WBPaper00057936 | |||||||||
| WBPaper00060787 | |||||||||
| WBPaper00063252 | |||||||||
| WBPaper00064542 | |||||||||
| WBPaper00064685 | |||||||||
| WBPaper00064783 | |||||||||
| WBPaper00065077 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
