WormBase Tree Display for Gene: WBGene00002057
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WBGene00002057 | SMap | S_parent | Sequence | R04E5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ifd-1 | |||||||
Sequence_name | R04E5.10 | ||||||||
Molecular_name | R04E5.10 | ||||||||
R04E5.10.1 | |||||||||
CE30100 | |||||||||
Other_name | IF D1 | ||||||||
CELE_R04E5.10 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | ifd-1 | ||||||||
DB_info | Database | AceView | gene | XJ442 | |||||
WormQTL | gene | WBGene00002057 | |||||||
WormFlux | gene | WBGene00002057 | |||||||
NDB | locus_tag | CELE_R04E5.10 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002057|UniProtKB=Q86DC6 | |||||||
family | PTHR45721 | ||||||||
NCBI | gene | 187585 | |||||||
RefSeq | protein | NM_001029659.5 | |||||||
SwissProt | UniProtAcc | Q86DC6 | |||||||
UniProt_GCRP | UniProtAcc | Q86DC6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ifd | ||||||||
Allele (71) | |||||||||
Strain | WBStrain00032547 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (29) | |||||||||
Paralog (12) | |||||||||
Structured_description | Concise_description | ifd-1 encodes two isoforms of a nonessential intermediate filament protein; IFD-1 is predicted to function as a structural component of the cytoskeleton; IFD-1 has no obvious function in RNAi assays. | Paper_evidence | WBPaper00004761 | |||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in cellular localization; heterochromatin formation; and nucleus organization. Predicted to be located in nuclear envelope and nuclear lamina. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R04E5.10 | |||||||
Corresponding_CDS_history | R04E5.10b:wp272 | ||||||||
Corresponding_transcript | R04E5.10.1 | ||||||||
Other_sequence | JI175145.1 | ||||||||
Associated_feature | WBsf654239 | ||||||||
WBsf670860 | |||||||||
WBsf670861 | |||||||||
WBsf1006256 | |||||||||
WBsf1023474 | |||||||||
WBsf1023475 | |||||||||
WBsf237721 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr3399 | ||||||||
Expr1015835 | |||||||||
Expr1031210 | |||||||||
Expr1154946 | |||||||||
Expr2012683 | |||||||||
Expr2030919 | |||||||||
Drives_construct | WBCnstr00011378 | ||||||||
WBCnstr00036487 | |||||||||
Construct_product | WBCnstr00036487 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (208) | |||||||||
Interaction (49) | |||||||||
Map_info | Map | X | Position | 0.412533 | Error | 0.003557 | |||
Positive | Positive_clone | R04E5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Sequence connection from [Karabinos A, Weber K]. krb 13/11/01 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |