Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00003008

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00003008SMapS_parentSequenceY54G2A
IdentityVersion1
NameCGC_namelin-22Person_evidenceWBPerson261
Sequence_nameY54G2A.1
Molecular_nameY54G2A.1
Y54G2A.1.1
CE26703
Other_namehlh-9Person_evidenceWBPerson346
4D656Accession_evidenceEMBLAF304120
CELE_Y54G2A.1Accession_evidenceNDBBX284604
Public_namelin-22
DB_infoDatabaseAceViewgene4D787
WormQTLgeneWBGene00003008
WormFluxgeneWBGene00003008
NDBlocus_tagCELE_Y54G2A.1
PanthergeneCAEEL|WormBase=WBGene00003008|UniProtKB=G5EF76
familyPTHR10985
NCBIgene177082
RefSeqproteinNM_067880.6
SwissProtUniProtAccG5EF76
UniProt_GCRPUniProtAccG5EF76
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
Reference_alleleWBVar00089461
Allele (74)
Legacy_information (2)
Strain (12)
RNASeq_FPKM (74)
GO_annotation (17)
OrthologWBGene00065705Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00076897Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00026235Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00220960Brugia malayiFrom_analysisWormBase-Compara
CSP26.g20760Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2635Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP38.g6746Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2347Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24520Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17172Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_01775.g16729Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lin-22Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold604.g5529Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00058.g2863Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04786Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014326Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40245500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9902Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00122648Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00241807Onchocerca volvulusFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-980526-144Danio rerioFrom_analysisOrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-980526-274Danio rerioFrom_analysisPanther
PhylomeDB
HGNC:5192Homo sapiensFrom_analysisOrthoInspector
SonicParanoid
MGI:104853Mus musculusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
RGD:62081Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
ParalogWBGene00001964Caenorhabditis elegansFrom_analysisPanther
WBGene00001966Caenorhabditis elegansFrom_analysisPanther
Structured_description (2)
Disease_infoPotential_modelDOID:264Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5192)
Molecular_infoCorresponding_CDSY54G2A.1
Corresponding_transcriptY54G2A.1.1
Other_sequenceEX916391.1
Hbac_isotig05734
EG025731.1
HBC05050_1
HBC04228_1
Associated_featureWBsf660013
WBsf718055
WBsf718056
WBsf978797
WBsf1026934
WBsf1026935
WBsf1026936
Transcription_factorWBTranscriptionFactor000727
Experimental_infoRNAi_resultWBRNAi00057436Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00004218
WBCnstr00036289
WBCnstr00039720
WBCnstr00039721
WBCnstr00039722
WBCnstr00039723
Construct_productWBCnstr00016691
WBCnstr00016896
WBCnstr00036289
Regulate_expr_clusterWBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053295:lin-22(ot267)_upregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053295:lin-22(ot269)_upregulated
Microarray_results (22)
Expression_cluster (67)
Interaction (101)
Map_infoMapIVPosition-6.65585Error0.044343
Well_ordered
PositivePositive_cloneY54G2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Y94H6
Mapping_dataMulti_point683
684
691
Reference (147)
RemarkThe attached sequence (Y54G2A.1) was previously connected to him-5 by mistake [030212 krb]
MethodGene