WormBase Tree Display for Gene: WBGene00003008
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| WBGene00003008 | SMap | S_parent | Sequence | Y54G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lin-22 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y54G2A.1 | ||||||||
| Molecular_name | Y54G2A.1 | ||||||||
| Y54G2A.1.1 | |||||||||
| CE26703 | |||||||||
| Other_name | hlh-9 | Person_evidence | WBPerson346 | ||||||
| 4D656 | Accession_evidence | EMBL | AF304120 | ||||||
| CELE_Y54G2A.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | lin-22 | ||||||||
| DB_info | Database | AceView | gene | 4D787 | |||||
| WormQTL | gene | WBGene00003008 | |||||||
| WormFlux | gene | WBGene00003008 | |||||||
| NDB | locus_tag | CELE_Y54G2A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003008|UniProtKB=G5EF76 | |||||||
| family | PTHR10985 | ||||||||
| NCBI | gene | 177082 | |||||||
| RefSeq | protein | NM_067880.6 | |||||||
| SwissProt | UniProtAcc | G5EF76 | |||||||
| UniProt_GCRP | UniProtAcc | G5EF76 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| Reference_allele | WBVar00089461 | ||||||||
| Allele (74) | |||||||||
| Legacy_information | n372 : V1-V4 divide like V5 resulting in multiple ectopic postdeirids in hermaphrodites and males and multiple ectopic rays in males. Males also have hermaphroditic Pn.p's and are mostly missing lateral alae. ES1 (hermaphrodite) ES2 (male). ME2. NA1. | ||||||||
| See also n372, n1113 | |||||||||
| Strain (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00001964 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001966 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description (2) | |||||||||
| Disease_info | Potential_model | DOID:264 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5192) | ||||
| Molecular_info | Corresponding_CDS | Y54G2A.1 | |||||||
| Corresponding_transcript | Y54G2A.1.1 | ||||||||
| Other_sequence | EX916391.1 | ||||||||
| Hbac_isotig05734 | |||||||||
| EG025731.1 | |||||||||
| HBC05050_1 | |||||||||
| HBC04228_1 | |||||||||
| Associated_feature | WBsf660013 | ||||||||
| WBsf718055 | |||||||||
| WBsf718056 | |||||||||
| WBsf978797 | |||||||||
| WBsf1026934 | |||||||||
| WBsf1026935 | |||||||||
| WBsf1026936 | |||||||||
| Transcription_factor | WBTranscriptionFactor000727 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057436 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00004218 | ||||||||
| WBCnstr00036289 | |||||||||
| WBCnstr00039720 | |||||||||
| WBCnstr00039721 | |||||||||
| WBCnstr00039722 | |||||||||
| WBCnstr00039723 | |||||||||
| Construct_product | WBCnstr00016691 | ||||||||
| WBCnstr00016896 | |||||||||
| WBCnstr00036289 | |||||||||
| Regulate_expr_cluster | WBPaper00053295:lin-22(icb38)_downregulated | ||||||||
| WBPaper00053295:lin-22(icb38)_upregulated | |||||||||
| WBPaper00053295:lin-22(ot267)_downregulated | |||||||||
| WBPaper00053295:lin-22(ot267)_upregulated | |||||||||
| WBPaper00053295:lin-22(ot269)_downregulated | |||||||||
| WBPaper00053295:lin-22(ot269)_upregulated | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (67) | |||||||||
| Interaction (101) | |||||||||
| Map_info | Map | IV | Position | -6.65585 | Error | 0.044343 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y94H6 | |||||||||
| Mapping_data | Multi_point | 683 | |||||||
| 684 | |||||||||
| 691 | |||||||||
| Reference (147) | |||||||||
| Remark | The attached sequence (Y54G2A.1) was previously connected to him-5 by mistake [030212 krb] | ||||||||
| Method | Gene |
