WormBase Tree Display for Gene: WBGene00003076
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| WBGene00003076 | Evidence | Person_evidence | WBPerson1846 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F40F8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lsm-1 | |||||||
| Sequence_name | F40F8.9 | ||||||||
| Molecular_name | F40F8.9 | ||||||||
| F40F8.9.1 | |||||||||
| CE05848 | |||||||||
| Other_name | CELE_F40F8.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | lsm-1 | ||||||||
| DB_info | Database | AceView | gene | 2L417 | |||||
| WormQTL | gene | WBGene00003076 | |||||||
| WormFlux | gene | WBGene00003076 | |||||||
| NDB | locus_tag | CELE_F40F8.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003076|UniProtKB=Q20229 | |||||||
| family | PTHR15588 | ||||||||
| NCBI | gene | 174700 | |||||||
| RefSeq | protein | NM_063984.6 | |||||||
| TREEFAM | TREEFAM_ID | TF105846 | |||||||
| TrEMBL | UniProtAcc | Q20229 | |||||||
| UniProt_GCRP | UniProtAcc | Q20229 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsm | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| WBVar00377745 | |||||||||
| WBVar00766976 | |||||||||
| WBVar00766977 | |||||||||
| WBVar01499606 | |||||||||
| WBVar01499607 | |||||||||
| WBVar00252236 | |||||||||
| WBVar01498940 | |||||||||
| WBVar02121139 | |||||||||
| Strain | WBStrain00004795 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP2520 | ||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00003082 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA cap binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Located in P-body and cytoplasmic stress granule. Expressed in germ line and somatic cell. Is an ortholog of human LSM1 (LSM1 homolog, mRNA degradation associated). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F8.9 | |||||||
| Corresponding_transcript | F40F8.9.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf644651 | ||||||||
| WBsf654847 | |||||||||
| WBsf658223 | |||||||||
| WBsf222098 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr8554 | ||||||||
| Expr12401 | |||||||||
| Expr1028154 | |||||||||
| Expr1031451 | |||||||||
| Expr1150747 | |||||||||
| Expr2013289 | |||||||||
| Expr2031520 | |||||||||
| Drives_construct | WBCnstr00020676 | ||||||||
| WBCnstr00020744 | |||||||||
| WBCnstr00020745 | |||||||||
| WBCnstr00036247 | |||||||||
| Construct_product | WBCnstr00005584 | ||||||||
| WBCnstr00020676 | |||||||||
| WBCnstr00020744 | |||||||||
| WBCnstr00020745 | |||||||||
| WBCnstr00022515 | |||||||||
| WBCnstr00036247 | |||||||||
| Regulate_expr_cluster | WBPaper00050193:lsm-1(tm3585)_downregulated_L3 | ||||||||
| WBPaper00050193:lsm-1(tm3585)_upregulated_L3 | |||||||||
| WBPaper00059527:lsm-1_downregulated_L1 | |||||||||
| WBPaper00059527:lsm-1_upregulated_L1 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction (285) | |||||||||
| Map_info | Map | II | Position | 3.32222 | Error | 0.00133 | |||
| Positive | Positive_clone | F40F8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032091 | ||||||||
| WBPaper00036960 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047010 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059527 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
