WormBase Tree Display for Gene: WBGene00003089
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| WBGene00003089 | Evidence | Paper_evidence | WBPaper00005491 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K02C4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ltd-1 | Person_evidence | WBPerson1430 | |||||
| Sequence_name | K02C4.4 | ||||||||
| Molecular_name | K02C4.4a | ||||||||
| K02C4.4a.1 | |||||||||
| CE32687 | |||||||||
| K02C4.4b | |||||||||
| CE51496 | |||||||||
| K02C4.4b.1 | |||||||||
| Other_name | CELE_K02C4.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ltd-1 | ||||||||
| DB_info | Database | AceView | gene | 2I380 | |||||
| WormQTL | gene | WBGene00003089 | |||||||
| WormFlux | gene | WBGene00003089 | |||||||
| NDB | locus_tag | CELE_K02C4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003089|UniProtKB=G5EF51 | |||||||
| family | PTHR47020 | ||||||||
| NCBI | gene | 174301 | |||||||
| RefSeq | protein | NM_001322746.3 | |||||||
| NM_063296.7 | |||||||||
| SwissProt | UniProtAcc | G5EF51 | |||||||
| UniProt_GCRP | UniProtAcc | G5EF51 | |||||||
| OMIM | gene | 605739 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ltd | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00051429 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00017422 | ||||||||
| 00017423 | |||||||||
| 00017424 | |||||||||
| 00017425 | |||||||||
| 00017426 | |||||||||
| 00017427 | |||||||||
| 00017428 | |||||||||
| 00017429 | |||||||||
| 00017430 | |||||||||
| 00017431 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00018367 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | ltd-1 encodes a protein with LIM and transglutaminase domains; LTD-1 is homologous to the mouse KY protein (MGI:96709, mutated in kyphoscoliosis), and to the HILLARIN protein of Hirudo medicinalis, found at axon hillocks; ltd-1 is expressed in hypodermal cells from the twofold stage embryo to adulthood. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005491 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00012838 | |||||||||
| WBPaper00012879 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 27 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable metal ion binding activity. Predicted to be involved in muscle structure development. Located in cell-cell junction and cytoplasm. Expressed in epithelial cell and isthmus. Human ortholog(s) of this gene implicated in myofibrillar myopathy 7. Is an ortholog of human KY (kyphoscoliosis peptidase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080098 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26576) | ||||
| Molecular_info | Corresponding_CDS | K02C4.4a | |||||||
| K02C4.4b | |||||||||
| Corresponding_CDS_history | K02C4.4:wp91 | ||||||||
| Corresponding_transcript | K02C4.4a.1 | ||||||||
| K02C4.4b.1 | |||||||||
| Other_sequence (54) | |||||||||
| Associated_feature (13) | |||||||||
| Transcription_factor | WBTranscriptionFactor000678 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00049683 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103428 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109791 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109697 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109744 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109650 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092921 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016442 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001907 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2049 | ||||||||
| Expr2252 | |||||||||
| Expr9390 | |||||||||
| Expr1020899 | |||||||||
| Expr1031463 | |||||||||
| Expr1153407 | |||||||||
| Expr2013306 | |||||||||
| Expr2031537 | |||||||||
| Drives_construct | WBCnstr00010729 | ||||||||
| WBCnstr00036239 | |||||||||
| Construct_product | WBCnstr00010729 | ||||||||
| WBCnstr00013955 | |||||||||
| WBCnstr00036239 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (208) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | II | Position | 0.663748 | Error | 0.001263 | |||
| Positive | Positive_clone | K02C4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005491 | ||||||||
| WBPaper00006295 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
