WormBase Tree Display for Gene: WBGene00003173
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WBGene00003173 | SMap | S_parent | Sequence | C50H2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | mec-9 | Person_evidence | WBPerson95 | |||||
Sequence_name | C50H2.3 | ||||||||
Molecular_name | C50H2.3a | ||||||||
C50H2.3a.1 | |||||||||
CE05481 | |||||||||
C50H2.3b | |||||||||
CE08916 | |||||||||
C50H2.3b.1 | |||||||||
Other_name | CELE_C50H2.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | mec-9 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00003173 | |||||
WormFlux | gene | WBGene00003173 | |||||||
NDB | locus_tag | CELE_C50H2.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003173|UniProtKB=Q18761 | |||||||
family | PTHR24039 | ||||||||
NCBI | gene | 179382 | |||||||
RefSeq | protein | NM_001269224.3 | |||||||
NM_001269225.3 | |||||||||
TREEFAM | TREEFAM_ID | TF316678 | |||||||
TrEMBL | UniProtAcc | G3MVG9 | |||||||
Q18761 | |||||||||
UniProt_GCRP | UniProtAcc | Q18761 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | mec | ||||||||
Allele | WBVar00144358 | ||||||||
WBVar00266680 | |||||||||
WBVar00266564 | |||||||||
WBVar02149330 | |||||||||
WBVar00144043 | |||||||||
WBVar00144003 | |||||||||
WBVar02158544 | |||||||||
WBVar01863936 | |||||||||
WBVar01863937 | |||||||||
WBVar01863938 | |||||||||
WBVar00298901 | |||||||||
WBVar01863939 | |||||||||
WBVar01863940 | |||||||||
WBVar01863941 | |||||||||
WBVar01863942 | |||||||||
WBVar01863943 | |||||||||
WBVar01863944 | |||||||||
WBVar01863945 | |||||||||
WBVar01863946 | |||||||||
WBVar01863947 | |||||||||
WBVar01863948 | |||||||||
WBVar01863949 | |||||||||
WBVar01863950 | |||||||||
WBVar01461337 | |||||||||
WBVar01863951 | |||||||||
WBVar01863952 | |||||||||
WBVar01500097 | |||||||||
WBVar00266499 | |||||||||
WBVar01742883 | |||||||||
WBVar01742884 | |||||||||
WBVar00266502 | |||||||||
WBVar00266503 | |||||||||
WBVar00266510 | |||||||||
WBVar00266527 | |||||||||
WBVar00316864 | |||||||||
WBVar00266535 | |||||||||
WBVar01500129 | |||||||||
WBVar02054748 | |||||||||
WBVar00266541 | |||||||||
WBVar00266544 | |||||||||
WBVar00266559 | |||||||||
WBVar00467566 | |||||||||
WBVar00467567 | |||||||||
WBVar00467568 | |||||||||
WBVar00467569 | |||||||||
WBVar00467570 | |||||||||
WBVar00467571 | |||||||||
WBVar00467572 | |||||||||
WBVar00467573 | |||||||||
WBVar00467574 | |||||||||
WBVar01499056 | |||||||||
WBVar01500167 | |||||||||
WBVar00093948 | |||||||||
WBVar01039534 | |||||||||
WBVar00266624 | |||||||||
WBVar01039535 | |||||||||
WBVar01039536 | |||||||||
WBVar01039537 | |||||||||
WBVar00302807 | |||||||||
WBVar01039538 | |||||||||
WBVar01039539 | |||||||||
WBVar01039540 | |||||||||
WBVar01039541 | |||||||||
WBVar01039542 | |||||||||
WBVar01039543 | |||||||||
WBVar01039544 | |||||||||
WBVar01039545 | |||||||||
WBVar01039546 | |||||||||
WBVar02060556 | |||||||||
WBVar01039547 | |||||||||
WBVar01039548 | |||||||||
WBVar02060557 | |||||||||
WBVar00144042 | |||||||||
WBVar01039549 | |||||||||
WBVar02060558 | |||||||||
WBVar01039550 | |||||||||
WBVar02060559 | |||||||||
WBVar01808606 | |||||||||
WBVar02060560 | |||||||||
WBVar01039551 | |||||||||
WBVar02060561 | |||||||||
WBVar01039552 | |||||||||
WBVar01039553 | |||||||||
WBVar01039554 | |||||||||
WBVar01039555 | |||||||||
WBVar01039556 | |||||||||
WBVar01039557 | |||||||||
WBVar00266655 | |||||||||
WBVar01039558 | |||||||||
WBVar01039559 | |||||||||
WBVar01039560 | |||||||||
WBVar00266658 | |||||||||
WBVar01039561 | |||||||||
WBVar01039562 | |||||||||
WBVar01039563 | |||||||||
WBVar01039564 | |||||||||
WBVar01039565 | |||||||||
WBVar00266665 | |||||||||
WBVar00266666 | |||||||||
WBVar01039566 | |||||||||
WBVar00266667 | |||||||||
WBVar01039567 | |||||||||
WBVar01039568 | |||||||||
WBVar01039569 | |||||||||
WBVar01039570 | |||||||||
WBVar01039571 | |||||||||
WBVar02148392 | |||||||||
WBVar01410690 | |||||||||
WBVar01039572 | |||||||||
WBVar01039573 | |||||||||
WBVar01499316 | |||||||||
WBVar01039574 | |||||||||
WBVar01039575 | |||||||||
WBVar01039576 | |||||||||
WBVar01039577 | |||||||||
WBVar01039578 | |||||||||
WBVar01039579 | |||||||||
WBVar01499510 | |||||||||
WBVar01499511 | |||||||||
Legacy_information | u27amber : touch insensitive lethargic. ES2 ME2. NA > 20 (e1494 u164amber etc.). | ||||||||
[C.elegansII] u27amb : touch insensitive lethargic. ES2 ME2. OA>30: e1494, e1852, u164amb etc. Cloned: 2 kb and 3 kb transcripts, transpliced to SL1 and SL2, encode protein with Kunitztype serine protease inhibitor domains, EGF-like repeats. mec-9:GFP expressed in touch cells and PVD (3kb promoter) or more extensively (2kb promoter). [Chalfie and Au 1989; Huang and Chalfie 1994; TU] | |||||||||
Strain | WBStrain00032822 | ||||||||
WBStrain00004348 | |||||||||
WBStrain00006234 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog (21) | |||||||||
Paralog (31) | |||||||||
Structured_description | Concise_description | mec-9 encodes a predicted extracellular protein containing six EGF-like repeats,five Kunitz-type protease inhibitor domains, and a glutamic acid-rich region possibly involved in protein-protein interactions; mec-9 encodes two proteins, only one of which, MEC-9L, appears to be required for normal mechanosensory response to gentle touch and proper functioning of the touch receptor neurons; mec-9 interacts genetically with mec-5, which encodes a unique C. elegans collagen secreted by the hypodermis; MEC-9L is expressed and secreted by the touch receptor neurons. | Paper_evidence | WBPaper00002379 | |||||
WBPaper00005666 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable calcium ion binding activity and serine-type endopeptidase inhibitor activity. Involved in positive regulation of multicellular organismal process and response to mechanical stimulus. Predicted to be located in extracellular region. Expressed in PVDL; PVDR; head neurons; touch receptor neurons; and ventral cord neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C50H2.3a | |||||||
C50H2.3b | |||||||||
Corresponding_CDS_history | C50H2.3a:wp144 | ||||||||
C50H2.3b:wp144 | |||||||||
Corresponding_transcript | C50H2.3a.1 | ||||||||
C50H2.3b.1 | |||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf669266 | ||||||||
WBsf669267 | |||||||||
WBsf669268 | |||||||||
WBsf1001008 | |||||||||
WBsf1020239 | |||||||||
WBsf234297 | |||||||||
Experimental_info | RNAi_result | WBRNAi00042982 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012263 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067621 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112683 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089014 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr268 | ||||||||
Expr1026433 | |||||||||
Expr1146947 | |||||||||
Expr2013503 | |||||||||
Expr2031737 | |||||||||
Drives_construct | WBCnstr00004795 | ||||||||
WBCnstr00036197 | |||||||||
Construct_product | WBCnstr00036197 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (161) | |||||||||
Interaction (29) | |||||||||
Map_info | Map | V | Position | 2.2108 | Error | 0.000399 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | eDf1 | |||||||
Positive_clone | C50H2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Negative | Negative_clone | F15H4 | |||||||
Mapping_data | 2_point | 133 | |||||||
Multi_point | 284 | ||||||||
3103 | |||||||||
3104 | |||||||||
4628 | |||||||||
Pos_neg_data | 495 | ||||||||
1747 | |||||||||
1751 | |||||||||
3124 | |||||||||
3125 | |||||||||
3126 | |||||||||
3127 | |||||||||
Reference (49) | |||||||||
Method | Gene |