WormBase Tree Display for Gene: WBGene00003270
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| WBGene00003270 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00004927 | |||||||||
| SMap | S_parent | Sequence | ZK930 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-42 | Person_evidence | WBPerson18 | |||||
| Sequence_name | ZK930.8 | ||||||||
| Molecular_name | ZK930.8 | ||||||||
| ZK930.8a | |||||||||
| ZK930.8b | |||||||||
| Other_name | cel-mir-42 | Remark | miRBase V21 import | ||||||
| Cel-Mir-36-P8 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_ZK930.8 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-42 | ||||||||
| DB_info | Database | miRBase | acc | MI0000013 | |||||
| SignaLink | mirna | cel-mir-42 | |||||||
| MirGeneDB | cel | Cel-Mir-36-P8 | |||||||
| NDB | locus_tag | CELE_ZK930.8 | |||||||
| NCBI | gene | 260038 | |||||||
| RefSeq | protein | NR_000928.2 | |||||||
| RNAcentral | URSid | URS00000D1CA7 | |||||||
| URS00001ED05D | |||||||||
| URS00002A1423 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (11) | |||||||||
| Strain | WBStrain00035708 | ||||||||
| In_cluster | MIR-36 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-42 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-42 is part of the mir-42-mir-44 cluster of miRNAs; mir-42 is expressed predominantly in the embryo; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-42 is not known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 18 Jan 2005 00:00:00 | ||||||||
| Automated_description | Expressed in seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | ZK930.8 | |||||||
| ZK930.8a | |||||||||
| ZK930.8b | |||||||||
| Other_sequence | AJ487566 | ||||||||
| Associated_feature | WBsf979097 | ||||||||
| WBsf989943 | |||||||||
| WBsf1013339 | |||||||||
| Experimental_info | Expr_pattern | Expr1660 | |||||||
| Expr2537 | |||||||||
| Expr8332 | |||||||||
| Expr8451 | |||||||||
| Expr10904 | |||||||||
| Drives_construct | WBCnstr00005491 | ||||||||
| WBCnstr00009667 | |||||||||
| WBCnstr00013264 | |||||||||
| Expression_cluster (30) | |||||||||
| Interaction | WBInteraction000503776 | ||||||||
| WBInteraction000525417 | |||||||||
| WBInteraction000542491 | |||||||||
| Map_info | Map | II | Position | 4.13201 | Error | 0.002664 | |||
| Positive | Inside_rearr | nDf49 | |||||||
| Positive_clone | ZK930 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4224 | |||||||
| Pos_neg_data | 10911 | ||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
