WormBase Tree Display for Gene: WBGene00003281
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| WBGene00003281 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F36H1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-53 | Person_evidence | WBPerson18 | |||||
| Sequence_name | F36H1.8 | ||||||||
| Molecular_name | F36H1.8 | ||||||||
| F36H1.8a | |||||||||
| F36H1.8b | |||||||||
| Other_name | cel-mir-53 | Remark | miRBase V21 import | ||||||
| Cel-Mir-52-P2 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_F36H1.8 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | mir-53 | ||||||||
| DB_info | Database | miRBase | acc | MI0000024 | |||||
| SignaLink | mirna | cel-mir-53 | |||||||
| MirGeneDB | cel | Cel-Mir-52-P2 | |||||||
| NDB | locus_tag | CELE_F36H1.8 | |||||||
| NCBI | gene | 259924 | |||||||
| RefSeq | protein | NR_000448.2 | |||||||
| RNAcentral | URSid | URS0000207F0E | |||||||
| URS00002563DB | |||||||||
| URS00002D7C10 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar00435169 | |||||||||
| WBVar00940976 | |||||||||
| WBVar02123093 | |||||||||
| WBVar02124207 | |||||||||
| WBVar00288072 | |||||||||
| WBVar00090801 | |||||||||
| WBVar01500245 | |||||||||
| Strain | WBStrain00027416 | ||||||||
| WBStrain00027578 | |||||||||
| In_cluster | MIR-52 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-53 encodes a microRNA, a small non-protein coding RNA; mir-53 is expressed constitutively throughout development; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-53 is not known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Jan 2005 00:00:00 | ||||||||
| Automated_description | Expressed in arcade cell; distal tip cell; hypodermis; muscle cell; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F36H1.8 | |||||||
| F36H1.8a | |||||||||
| F36H1.8b | |||||||||
| Other_sequence | AJ487577 | ||||||||
| Associated_feature | WBsf979115 | ||||||||
| WBsf997752 | |||||||||
| Experimental_info | Expr_pattern | Expr2483 | |||||||
| Expr8458 | |||||||||
| Expr9256 | |||||||||
| Expr13545 | |||||||||
| Drives_construct | WBCnstr00005542 | ||||||||
| WBCnstr00006123 | |||||||||
| WBCnstr00013855 | |||||||||
| Construct_product | WBCnstr00006515 | ||||||||
| WBCnstr00006516 | |||||||||
| Expression_cluster (23) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | IV | Position | 4.78723 | Error | 0.000833 | |||
| Positive | Positive_clone | F36H1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00005825 | |||||||||
| WBPaper00019487 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032187 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00032927 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00036127 | |||||||||
| WBPaper00043989 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
