WormBase Tree Display for Gene: WBGene00003288
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| WBGene00003288 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C32D5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-60 | Person_evidence | WBPerson18 | |||||
| Sequence_name | C32D5.13 | ||||||||
| Molecular_name | C32D5.13 | ||||||||
| C32D5.13a | |||||||||
| C32D5.13b | |||||||||
| Other_name | cel-mir-60 | Remark | miRBase V21 import | ||||||
| Cel-Mir-1993 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_C32D5.13 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-60 | ||||||||
| DB_info | Database | miRBase | acc | MI0000031 | |||||
| SignaLink | mirna | cel-mir-60 | |||||||
| MirGeneDB | cel | Cel-Mir-1993 | |||||||
| NDB | locus_tag | CELE_C32D5.13 | |||||||
| NCBI | gene | 260075 | |||||||
| RefSeq | protein | NR_000916.2 | |||||||
| RNAcentral | URSid | URS000048C732 | |||||||
| URS00005B9E23 | |||||||||
| URS0000778422 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| WBVar00172600 | |||||||||
| WBVar00090904 | |||||||||
| Strain | WBStrain00027557 | ||||||||
| In_cluster | MIR-1993 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-60 encodes a microRNA that seems to be conserved in Drosophila and humans; the mir-60 transcript is expressed most abundantly at the L1 stage of larval development. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 16 Nov 2004 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including daf-12; eat-2; and glp-4 based on tiling array and RNA-seq studies. Is affected by multi-walled carbon nanotube based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | C32D5.13 | |||||||
| C32D5.13a | |||||||||
| C32D5.13b | |||||||||
| Corresponding_transcript_history | C32D5.13a:wp274 | ||||||||
| Associated_feature | WBsf979104 | ||||||||
| Experimental_info | Expr_pattern | Expr1670 | |||||||
| Expr2468 | |||||||||
| Expr8463 | |||||||||
| Expr10934 | |||||||||
| Expr15735 | |||||||||
| Drives_construct | WBCnstr00005549 | ||||||||
| WBCnstr00042497 | |||||||||
| Regulate_expr_cluster | WBPaper00050121:mir-60(n4947)_downregulated | ||||||||
| WBPaper00050121:mir-60(n4947)_upregulated | |||||||||
| Expression_cluster (31) | |||||||||
| Interaction | WBInteraction000542241 | ||||||||
| WBInteraction000542243 | |||||||||
| Map_info | Map | II | Position | -0.381671 | Error | 0.000176 | |||
| Positive | Positive_clone | C32D5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032187 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00035168 | |||||||||
| WBPaper00050121 | |||||||||
| WBPaper00064592 | |||||||||
| WBPaper00064691 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
