WormBase Tree Display for Gene: WBGene00003311
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| WBGene00003311 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C06A6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-83 | Person_evidence | WBPerson18 | |||||
| Sequence_name | C06A6.6 | ||||||||
| Molecular_name | C06A6.6 | ||||||||
| C06A6.6a | |||||||||
| C06A6.6b | |||||||||
| Other_name | cel-mir-83 | Remark | miRBase V21 import | ||||||
| Cel-Mir-29-P1 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_C06A6.6 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | mir-83 | ||||||||
| DB_info | Database | miRBase | acc | MI0000054 | |||||
| SignaLink | mirna | cel-mir-83 | |||||||
| MirGeneDB | cel | Cel-Mir-29-P1 | |||||||
| NDB | locus_tag | CELE_C06A6.6 | |||||||
| NCBI | gene | 259853 | |||||||
| RefSeq | protein | NR_000446.2 | |||||||
| RNAcentral | URSid | URS0000328733 | |||||||
| URS0000418F30 | |||||||||
| URS00004C2028 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar00090888 | |||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar01499633 | |||||||||
| WBVar00923578 | |||||||||
| WBVar01500245 | |||||||||
| Strain (19) | |||||||||
| In_cluster | MIR-29 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-83 encodes a microRNA, a small non-protein coding RNA and has a potential ortholog in the nematode C. briggsae; mir-83 can be detected in the dauer stage, in the starved L1 larval stage and in him-8 mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-83 is unknown. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Expressed in body wall musculature; neurons; and pharynx. Used to study Parkinson's disease. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00035654 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
| Disease_relevance | mir-83 is a small non-protein coding RNA; microRNA expression profiling studies in an elegans transgenic model of Parkinson''s disease, where A53T alpha-synuclein is overexpressed, indicate that elegans mir-83 is differentially expressed. | Homo sapiens | Paper_evidence | WBPaper00035654 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jan 2014 00:00:00 | ||||||||
| Models_disease_in_annotation | WBDOannot00000259 | ||||||||
| Molecular_info | Corresponding_transcript | C06A6.6 | |||||||
| C06A6.6a | |||||||||
| C06A6.6b | |||||||||
| Associated_feature | WBsf979123 | ||||||||
| WBsf997056 | |||||||||
| WBsf997057 | |||||||||
| WBsf1017764 | |||||||||
| WBsf1017765 | |||||||||
| Experimental_info | Expr_pattern | Expr2471 | |||||||
| Expr8404 | |||||||||
| Expr8478 | |||||||||
| Expr10896 | |||||||||
| Expr13542 | |||||||||
| Expr14247 | |||||||||
| Expr14248 | |||||||||
| Expr14896 | |||||||||
| Drives_construct | WBCnstr00005500 | ||||||||
| WBCnstr00016876 | |||||||||
| WBCnstr00020641 | |||||||||
| WBCnstr00040680 | |||||||||
| Construct_product | WBCnstr00020638 | ||||||||
| WBCnstr00020639 | |||||||||
| WBCnstr00020640 | |||||||||
| WBCnstr00020641 | |||||||||
| WBCnstr00020642 | |||||||||
| Expression_cluster (24) | |||||||||
| Interaction | WBInteraction000525383 | ||||||||
| Map_info | Map | IV | Position | 3.49265 | Error | 0.000447 | |||
| Positive | Positive_clone | C06A6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00005825 | |||||||||
| WBPaper00005879 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00039747 | |||||||||
| WBPaper00042621 | |||||||||
| WBPaper00046931 | |||||||||
| WBPaper00055950 | |||||||||
| WBPaper00058749 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
