WormBase Tree Display for Gene: WBGene00003313

WBGene00003313 Evidence: Paper_evidence: WBPaper00004928
  SMap: S_parent: Sequence: F49E12
  Identity: Version: 1
    Name: CGC_name: mir-85 Person_evidence: WBPerson18
      Sequence_name: F49E12.11
      Molecular_name: F49E12.11
        F49E12.11a
        F49E12.11b
      Other_name: cel-mir-85 Remark: miRBase V21 import
            MirGeneDB 2.1 import
        CELE_F49E12.11 Accession_evidence: NDB BX284602
      Public_name: mir-85
    DB_info: Database: miRBase acc MI0000056
        SignaLink mirna cel-mir-85
        MirGeneDB cel Cel-Mir-85
        NDB locus_tag CELE_F49E12.11
        NCBI gene 260207
        RefSeq protein NR_000917.2
        RNAcentral URSid URS000003CA65
            URS00001CA0AF
            URS00004EC67E
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:31 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001265
    Gene_class: mir
    Allele: WBVar01499702
      WBVar00749933
      WBVar01498435
      WBVar01499423
      WBVar01498940
      WBVar00090804
    Strain: WBStrain00027419
    In_cluster: MIR-85
    RNASeq_FPKM (74)
    Structured_description: Concise_description: mir-85 encodes a microRNA, a small non-protein coding RNA and has a potential ortholog in the nematode C. briggsae; mir-85 is strongly expressed in the L3 and L4 larval stages, in adults and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-85 is unknown. Paper_evidence: WBPaper00004927
            WBPaper00005825
          Curator_confirmed: WBPerson324
          Date_last_updated: 08 Feb 2005 00:00:00
      Automated_description: Is affected by several genes including eat-2; prg-1; and alg-1 based on RNA-seq studies. Is affected by nicotine based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_transcript: F49E12.11
      F49E12.11a
      F49E12.11b
    Other_sequence: AJ487608
    Associated_feature: WBsf979107
  Experimental_info: RNAi_result: WBRNAi00015323 Inferred_automatically: RNAi_primary
      WBRNAi00047856 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2529
      Expr8406
      Expr8480
      Expr10887
    Drives_construct: WBCnstr00005541
    Regulate_expr_cluster: WBPaper00061800:miR-85(n4117)_downregulated_20C
      WBPaper00061800:miR-85(n4117)_downregulated_35C
      WBPaper00061800:miR-85(n4117)_upregulated_20C
      WBPaper00061800:miR-85(n4117)_upregulated_35C
    Expression_cluster (27)
    Interaction: WBInteraction000503780
      WBInteraction000542488
  Map_info: Map: II Position: 0.768381 Error: 0.000389
    Positive: Positive_clone: F49E12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene