WormBase Tree Display for Gene: WBGene00003321
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| WBGene00003321 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00005825 | |||||||||
| SMap | S_parent | Sequence | T12E12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-228 | Person_evidence | WBPerson18 | |||||
| Sequence_name | T12E12.7 | ||||||||
| Molecular_name | T12E12.7 | ||||||||
| T12E12.7a | |||||||||
| T12E12.7b | |||||||||
| Other_name | cel-mir-228 | Remark | miRBase V21 import | ||||||
| Cel-Mir-96-P3 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_T12E12.7 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | mir-228 | ||||||||
| DB_info | Database | miRBase | acc | MI0000303 | |||||
| SignaLink | mirna | cel-mir-228 | |||||||
| MirGeneDB | cel | Cel-Mir-96-P3 | |||||||
| NDB | locus_tag | CELE_T12E12.7 | |||||||
| NCBI | gene | 3565960 | |||||||
| RefSeq | protein | NR_002387.2 | |||||||
| RNAcentral | URSid | URS0000080150 | |||||||
| URS00002690E3 | |||||||||
| URS00003CA3FD | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar00090836 | ||||||||
| WBVar01499365 | |||||||||
| WBVar00911105 | |||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar01499242 | |||||||||
| WBVar01499633 | |||||||||
| WBVar01500245 | |||||||||
| Strain | WBStrain00027458 | ||||||||
| In_cluster | MIR-96 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-228 encodes a microRNA, a small non-protein coding RNA and appears to be conserved in C. briggsae; based on RNA sequence identity, miR-228 belongs to the miR-124 family of microRNAs along with miR-124 and human miR-124a-1, miR-124a-2, miR-124-a-3 and human miR-183; Drosophila miR-268 also appears to be homologous to miR-228; miR-228 is strongly expressed at all stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-228 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| WBPaper00005879 | |||||||||
| WBPaper00005932 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Expressed in germ line; neuronal sheath cell; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | T12E12.7 | |||||||
| T12E12.7a | |||||||||
| T12E12.7b | |||||||||
| Associated_feature | WBsf979122 | ||||||||
| WBsf996542 | |||||||||
| WBsf1017393 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018643 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2504 | ||||||||
| Expr2657 | |||||||||
| Expr7878 | |||||||||
| Expr8414 | |||||||||
| Expr10945 | |||||||||
| Expr11969 | |||||||||
| Expr13931 | |||||||||
| Drives_construct | WBCnstr00005532 | ||||||||
| WBCnstr00012965 | |||||||||
| WBCnstr00019845 | |||||||||
| WBCnstr00022846 | |||||||||
| WBCnstr00040758 | |||||||||
| Expression_cluster (23) | |||||||||
| Interaction | WBInteraction000524470 | ||||||||
| WBInteraction000524471 | |||||||||
| WBInteraction000524473 | |||||||||
| WBInteraction000524474 | |||||||||
| WBInteraction000542241 | |||||||||
| WBInteraction000542244 | |||||||||
| Map_info | Map | IV | Position | 1.84542 | Error | 0.00491 | |||
| Positive | Positive_clone | T12E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
