WormBase Tree Display for Gene: WBGene00003343
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| WBGene00003343 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y48D7A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-249 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y48D7A.3 | ||||||||
| Molecular_name | Y48D7A.3 | ||||||||
| Y48D7A.3a | |||||||||
| Y48D7A.3b | |||||||||
| Other_name | cel-mir-249 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_Y48D7A.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-249 | ||||||||
| DB_info | Database | miRBase | acc | MI0000325 | |||||
| SignaLink | mirna | cel-mir-249 | |||||||
| MirGeneDB | cel | Cel-Mir-249 | |||||||
| NDB | locus_tag | CELE_Y48D7A.3 | |||||||
| NCBI | gene | 3565348 | |||||||
| RefSeq | protein | NR_002431.2 | |||||||
| RNAcentral | URSid | URS00002B48AB | |||||||
| URS00004386AB | |||||||||
| URS0000445821 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar00090909 | ||||||||
| WBVar00251641 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01549428 | |||||||||
| WBVar01130745 | |||||||||
| Strain | WBStrain00027567 | ||||||||
| In_cluster | MIR-249 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-249 encodes a microRNA, a small non-protein coding RNA and has a potential ortholog in the nematode C. brigssae; as mir-249 could not be detected on northern blots, its expression profile is unknown; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-249 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 24 Feb 2005 00:00:00 | ||||||||
| Automated_description | Expressed in head neurons and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y48D7A.3 | |||||||
| Y48D7A.3a | |||||||||
| Y48D7A.3b | |||||||||
| Associated_feature | WBsf979143 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00002229 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr2593 | ||||||||
| Expr8595 | |||||||||
| Expr10786 | |||||||||
| Expr10960 | |||||||||
| Drives_construct | WBCnstr00013388 | ||||||||
| Expression_cluster (20) | |||||||||
| Interaction | WBInteraction000519849 | ||||||||
| Map_info | Map | X | Position | -12.6566 | Error | 0.000842 | |||
| Positive | Positive_clone | Y48D7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005825 | ||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032927 | |||||||||
| WBPaper00064375 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
