WormBase Tree Display for Gene: WBGene00003348
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| WBGene00003348 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK455 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-254 | Person_evidence | WBPerson18 | |||||
| Sequence_name | ZK455.9 | ||||||||
| Molecular_name | ZK455.9 | ||||||||
| ZK455.9a | |||||||||
| ZK455.9b | |||||||||
| Other_name | cel-mir-254 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_ZK455.9 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-254 | ||||||||
| DB_info | Database | miRBase | acc | MI0000330 | |||||
| MirGeneDB | cel | Cel-Mir-254 | |||||||
| NDB | locus_tag | CELE_ZK455.9 | |||||||
| NCBI | gene | 3565332 | |||||||
| RefSeq | protein | NR_002432.2 | |||||||
| RNAcentral | URSid | URS00002CD657 | |||||||
| URS000077BC1B | |||||||||
| URS000077CB44 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (14) | |||||||||
| Strain | WBStrain00027466 | ||||||||
| WBStrain00027560 | |||||||||
| In_cluster | MIR-254 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-254 encodes a microRNA, a small non-protein coding RNA and has a potential ortholog in the nematode C. brigssae; based on RNA sequence identity mir-254 is included in the mir-19 family of microRNAs with human microRNAs: mir-19a, mir-19b-1 and mir-19b-2; as mir-254 could not be detected on northern blots, its expression profile is unknown; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-254 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 25 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including eat-2; prg-1; and alg-1 based on RNA-seq studies. Is affected by nicotine and sanguinarine based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | ZK455.9 | |||||||
| ZK455.9a | |||||||||
| ZK455.9b | |||||||||
| Experimental_info | Expr_pattern | Expr2595 | |||||||
| Expr10962 | |||||||||
| Expression_cluster (18) | |||||||||
| Interaction | WBInteraction000523988 | ||||||||
| Map_info | Map | X | Position | 2.98486 | Error | 0.004648 | |||
| Positive | Positive_clone | ZK455 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005825 | ||||||||
| WBPaper00031335 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
