WormBase Tree Display for Gene: WBGene00003351
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| WBGene00003351 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y102A5D | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-257 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y102A5D.4 | ||||||||
| Molecular_name | Y102A5D.4 | ||||||||
| Y102A5D.4a | |||||||||
| Other_name | cel-mir-257 | Remark | miRBase V21 import | ||||||
| CELE_Y102A5D.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | mir-257 | ||||||||
| DB_info | Database | miRBase | acc | MI0000334 | |||||
| NDB | locus_tag | CELE_Y102A5D.4 | |||||||
| NCBI | gene | 3565172 | |||||||
| RefSeq | protein | NR_002405.2 | |||||||
| RNAcentral | URSid | URS00002B7096 | |||||||
| URS000034D37E | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00027478 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-257 encodes a microRNA, a small non-protein coding RNA; mir-257 is uniformly expressed from the embryonic stage to the adult stage; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-257 is unknown. | Paper_evidence | WBPaper00005879 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 25 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including alg-1; alg-2; and meg-3 based on RNA-seq studies. Is affected by nicotine based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y102A5D.4 | |||||||
| Y102A5D.4a | |||||||||
| Associated_feature | WBsf979129 | ||||||||
| Experimental_info | Expr_pattern | Expr8434 | |||||||
| Expr10965 | |||||||||
| Drives_construct | WBCnstr00013301 | ||||||||
| Expression_cluster | WBPaper00048474:SpaceRadiation-Microgravity_upregulated_N2 | ||||||||
| WBPaper00049006:nicotine_upregulated_F1 | |||||||||
| WBPaper00051404:alg-1(gk214)_upregulated_miRNA | |||||||||
| WBPaper00051404:alg-2(ok304)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(ram2)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(tm1163)_downregulated_miRNA | |||||||||
| WBPaper00057162:meg-3_meg-4_downregulated_sRNA | |||||||||
| Map_info | Map | V | Position | 12.8033 | Error | 0.001776 | |||
| Positive | Positive_clone | Y102A5D | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005879 | ||||||||
| WBPaper00031335 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| The annotation of cel-mir-257 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21. | |||||||||
| Method | Gene |
