WormBase Tree Display for Gene: WBGene00003572
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| WBGene00003572 | Evidence | Author_evidence | Schwartz EM | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C07A9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ncx-7 | |||||||
| Sequence_name | C07A9.11 | ||||||||
| Molecular_name | C07A9.11 | ||||||||
| C07A9.11.1 | |||||||||
| CE39219 | |||||||||
| Other_name | CELE_C07A9.11 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ncx-7 | ||||||||
| DB_info | Database | AceView | gene | 3K806 | |||||
| WormQTL | gene | WBGene00003572 | |||||||
| WormFlux | gene | WBGene00003572 | |||||||
| NDB | locus_tag | CELE_C07A9.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003572|UniProtKB=P34322 | |||||||
| family | PTHR12266 | ||||||||
| NCBI | gene | 176370 | |||||||
| RefSeq | protein | NM_066746.8 | |||||||
| SwissProt | UniProtAcc | P34322 | |||||||
| TREEFAM | TREEFAM_ID | TF323444 | |||||||
| UniProt_GCRP | UniProtAcc | P34322 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ncx | ||||||||
| Allele (64) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00003571 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003573 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003574 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003575 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ncx-7 encodes a putative Na[+]/Ca[2+] exchanger of uncertain stoichiometry and affinity, orthologous to human SLC24A6 and paralogous to NCX-6 and NCX-8/-10; NCX-7 may function intracellularly; NCX-7 has tandem Calx-alpha domains predicted to carry out ion transport; NCX-7 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00012774 | |||||
| WBPaper00028596 | |||||||||
| WBPaper00031156 | |||||||||
| WBPaper00031157 | |||||||||
| WBPaper00031158 | |||||||||
| WBPaper00031159 | |||||||||
| WBPaper00031160 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 07 Nov 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be located in membrane. Expressed in ADLL; ADLR; amphid neurons; and tail neurons. Is an ortholog of human SLC8B1 (solute carrier family 8 member B1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07A9.11 | |||||||
| Corresponding_CDS_history | C07A9.11:wp100 | ||||||||
| C07A9.11:wp151 | |||||||||
| Corresponding_transcript | C07A9.11.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf993779 | ||||||||
| WBsf1015663 | |||||||||
| WBsf227353 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010365 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006111 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039973 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11161 | ||||||||
| Expr1024822 | |||||||||
| Expr1031628 | |||||||||
| Expr1144050 | |||||||||
| Expr2013924 | |||||||||
| Expr2032163 | |||||||||
| Drives_construct | WBCnstr00018021 | ||||||||
| WBCnstr00036033 | |||||||||
| Construct_product | WBCnstr00036033 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | III | Position | 0.918865 | Error | 0.00244 | |||
| Positive | Positive_clone | C07A9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062223 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
