WormBase Tree Display for Gene: WBGene00003594
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| WBGene00003594 | SMap | S_parent | Sequence | Y56A3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nft-1 | |||||||
| Sequence_name | Y56A3A.13 | ||||||||
| Molecular_name | Y56A3A.13 | ||||||||
| Y56A3A.13.1 | |||||||||
| CE22580 | |||||||||
| Other_name | NitFhit | Accession_evidence | EMBL | AF069986 | |||||
| CELE_Y56A3A.13 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | nft-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nft | ||||||||
| Allele (267) | |||||||||
| Strain | WBStrain00003063 | ||||||||
| WBStrain00033252 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP3744 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00014206 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00017440 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The nft-1 gene encodes an ortholog of human FHIT, which when mutated is associated with head and neck cancers (OMIM:601153). | Paper_evidence | WBPaper00004103 | |||||
| WBPaper00012802 | |||||||||
| WBPaper00013573 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable bis(5'-adenosyl)-triphosphatase activity and deaminated glutathione amidase activity. Predicted to be involved in amide catabolic process and nucleobase-containing compound metabolic process. Expressed in tail. Is an ortholog of human NIT1 (nitrilase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y56A3A.13 | |||||||
| Corresponding_transcript | Y56A3A.13.1 | ||||||||
| Other_sequence (39) | |||||||||
| Associated_feature | WBsf659596 | ||||||||
| WBsf225878 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006885 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057572 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037537 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1877 | ||||||||
| Expr7067 | |||||||||
| Expr1017923 | |||||||||
| Expr1031643 | |||||||||
| Expr1161000 | |||||||||
| Expr2013986 | |||||||||
| Expr2032226 | |||||||||
| Drives_construct | WBCnstr00003556 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | III | Position | 13.5022 | Error | 0.007546 | |||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003154 | ||||||||
| WBPaper00004320 | |||||||||
| WBPaper00023086 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061045 | |||||||||
| Remark | Y56A3A.V changed to .13 following from sequence annotation. [sdm 05/00] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
