WormBase Tree Display for Gene: WBGene00003599
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| WBGene00003599 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhl-3 | Person_evidence | WBPerson599 | |||||
| Sequence_name | W04H10.3 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_W04H10.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nhl-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00003599 | |||||
| WormFlux | gene | WBGene00003599 | |||||||
| NDB | locus_tag | CELE_W04H10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003599|UniProtKB=H2L0K3 | |||||||
| family | PTHR25462 | ||||||||
| NCBI | gene | 173452 | |||||||
| RefSeq | protein | NM_001047353.6 | |||||||
| NM_001316864.3 | |||||||||
| NM_001316865.3 | |||||||||
| NM_001047352.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF344242 | |||||||
| TrEMBL | UniProtAcc | A0A0M7RF55 | |||||||
| H2L0K3 | |||||||||
| A0A0M7RE93 | |||||||||
| F8Y420 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L0K3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhl | ||||||||
| Allele (155) | |||||||||
| Strain | WBStrain00033047 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001730 | ||||||||
| 00001731 | |||||||||
| 00023143 | |||||||||
| 00111201 | |||||||||
| Ortholog (102) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin protein ligase activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); hematologic cancer (multiple); and pre-eclampsia. Is an ortholog of human PML (PML nuclear body scaffold) and TRIM45 (tripartite motif containing 45). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:4467 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9113) | ||||
| DOID:4159 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9113) | ||||||
| DOID:0060318 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9113) | ||||||
| DOID:10591 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9113) | ||||||
| DOID:9538 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9113) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9113) | ||||||
| Molecular_info | Corresponding_CDS | W04H10.3a | |||||||
| W04H10.3b | |||||||||
| W04H10.3c | |||||||||
| W04H10.3d | |||||||||
| Corresponding_CDS_history | W04H10.3:wp94 | ||||||||
| W04H10.3:wp154 | |||||||||
| W04H10.3a:wp226 | |||||||||
| W04H10.3a:wp234 | |||||||||
| W04H10.3b:wp226 | |||||||||
| W04H10.3b:wp234 | |||||||||
| Corresponding_transcript | W04H10.3a.1 | ||||||||
| W04H10.3b.1 | |||||||||
| W04H10.3c.1 | |||||||||
| W04H10.3d.1 | |||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf986448 | ||||||||
| WBsf986449 | |||||||||
| WBsf986450 | |||||||||
| WBsf222617 | |||||||||
| Transcription_factor | WBTranscriptionFactor000582 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00094684 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076739 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054801 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019608 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023785 | ||||||||
| Expr1031648 | |||||||||
| Expr1158341 | |||||||||
| Expr2013996 | |||||||||
| Expr2032236 | |||||||||
| Drives_construct | WBCnstr00036013 | ||||||||
| Construct_product | WBCnstr00036013 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (115) | |||||||||
| Map_info | Map | II | Position | -15.5937 | Error | 9.6e-05 | |||
| Positive | Positive_clone | W04H10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00027315 | |||||||||
| WBPaper00032055 | |||||||||
| WBPaper00032974 | |||||||||
| WBPaper00034865 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Slack FJ], 02/06/10 krb | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
