WormBase Tree Display for Gene: WBGene00003635
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| WBGene00003635 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F16H11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-45 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F16H11.5 | ||||||||
| Molecular_name | F16H11.5 | ||||||||
| F16H11.5.1 | |||||||||
| CE40252 | |||||||||
| Other_name | CELE_F16H11.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nhr-45 | ||||||||
| DB_info | Database | AceView | gene | XF276 | |||||
| WormQTL | gene | WBGene00003635 | |||||||
| WormFlux | gene | WBGene00003635 | |||||||
| NDB | locus_tag | CELE_F16H11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003635|UniProtKB=Q19496 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 180738 | |||||||
| RefSeq | protein | NM_076396.8 | |||||||
| TREEFAM | TREEFAM_ID | TF315401 | |||||||
| TrEMBL | UniProtAcc | Q19496 | |||||||
| UniProt_GCRP | UniProtAcc | Q19496 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (54) | |||||||||
| Strain | WBStrain00040126 | ||||||||
| WBStrain00040154 | |||||||||
| WBStrain00040156 | |||||||||
| WBStrain00007974 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00064915 | ||||||||
| 00064916 | |||||||||
| 00064917 | |||||||||
| 00064918 | |||||||||
| 00111346 | |||||||||
| 00111347 | |||||||||
| 00111348 | |||||||||
| 00111349 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F16H11.5 | |||||||
| Corresponding_CDS_history | F16H11.5:wp92 | ||||||||
| F16H11.5:wp159 | |||||||||
| Corresponding_transcript | F16H11.5.1 | ||||||||
| Other_sequence | Oden_isotig14476 | ||||||||
| Acan_isotig09950 | |||||||||
| CR05228 | |||||||||
| Oden_isotig14477 | |||||||||
| CBC08804_1 | |||||||||
| CJC16157_1 | |||||||||
| Dviv_isotig17866 | |||||||||
| Dviv_isotig17865 | |||||||||
| CRC09114_1 | |||||||||
| Associated_feature | WBsf670450 | ||||||||
| WBsf670451 | |||||||||
| WBsf670452 | |||||||||
| WBsf1005023 | |||||||||
| WBsf1022827 | |||||||||
| WBsf237301 | |||||||||
| Transcription_factor | WBTranscriptionFactor000337 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00044828 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013427 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001772 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084676 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107346 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016557 | ||||||||
| Expr1031679 | |||||||||
| Expr1148793 | |||||||||
| Expr2014194 | |||||||||
| Expr2032435 | |||||||||
| Drives_construct | WBCnstr00006162 | ||||||||
| WBCnstr00035981 | |||||||||
| Construct_product | WBCnstr00006162 | ||||||||
| WBCnstr00035981 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (169) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Map | X | Position | -6.92495 | Error | 0.029724 | |||
| Positive | Positive_clone | F16H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5264 | |||||||
| 5494 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005859 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00036254 | |||||||||
| WBPaper00056290 | |||||||||
| WBPaper00062305 | |||||||||
| WBPaper00063655 | |||||||||
| WBPaper00064291 | |||||||||
| WBPaper00064708 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
