WormBase Tree Display for Gene: WBGene00003684
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| WBGene00003684 | SMap | S_parent | Sequence | C12D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-94 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C12D5.8 | ||||||||
| Molecular_name | C12D5.8a | ||||||||
| C12D5.8a.1 | |||||||||
| CE32586 | |||||||||
| C12D5.8b | |||||||||
| CE32587 | |||||||||
| C12D5.8a.2 | |||||||||
| C12D5.8b.1 | |||||||||
| C12D5.8b.2 | |||||||||
| Other_name | CELE_C12D5.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-94 | ||||||||
| DB_info | Database | AceView | gene | 5I166 | |||||
| WormQTL | gene | WBGene00003684 | |||||||
| WormFlux | gene | WBGene00003684 | |||||||
| NDB | locus_tag | CELE_C12D5.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003684|UniProtKB=G5ECI7 | |||||||
| family | PTHR46800 | ||||||||
| NCBI | gene | 179149 | |||||||
| RefSeq | protein | NM_001383342.1 | |||||||
| NM_001392548.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF315401 | |||||||
| TrEMBL | UniProtAcc | Q8I7M3 | |||||||
| G5ECI7 | |||||||||
| UniProt_GCRP | UniProtAcc | G5ECI7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00036799 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00011877 | ||||||||
| 00011878 | |||||||||
| 00011879 | |||||||||
| 00011880 | |||||||||
| 00111533 | |||||||||
| 00111534 | |||||||||
| 00111535 | |||||||||
| 00111536 | |||||||||
| Ortholog (20) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C12D5.8a | |||||||
| C12D5.8b | |||||||||
| Corresponding_CDS_history | C12D5.8:wp90 | ||||||||
| Corresponding_transcript | C12D5.8a.1 | ||||||||
| C12D5.8a.2 | |||||||||
| C12D5.8b.1 | |||||||||
| C12D5.8b.2 | |||||||||
| Associated_feature | WBsf652788 | ||||||||
| WBsf652789 | |||||||||
| WBsf978852 | |||||||||
| WBsf233978 | |||||||||
| WBsf233979 | |||||||||
| Transcription_factor | WBTranscriptionFactor000648 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00010648 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107349 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001418 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092925 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021249 | ||||||||
| Expr1031713 | |||||||||
| Expr1144449 | |||||||||
| Expr2014246 | |||||||||
| Expr2032487 | |||||||||
| Drives_construct | WBCnstr00035949 | ||||||||
| Construct_product | WBCnstr00035949 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction | WBInteraction000179975 | ||||||||
| WBInteraction000234352 | |||||||||
| WBInteraction000264244 | |||||||||
| WBInteraction000386144 | |||||||||
| WBInteraction000535316 | |||||||||
| Map_info | Map | V | Position | 0.836667 | Error | 0.002119 | |||
| Positive | Positive_clone | C12D5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026592 | ||||||||
| WBPaper00027309 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
