WormBase Tree Display for Gene: WBGene00003700
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| WBGene00003700 | SMap | S_parent | Sequence | Y46H3D | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-110 | Person_evidence | WBPerson600 | |||||
| Sequence_name | Y46H3D.5 | ||||||||
| Molecular_name | Y46H3D.5a | ||||||||
| Y46H3D.5a.1 | |||||||||
| CE38005 | |||||||||
| Y46H3D.5b | |||||||||
| CE39295 | |||||||||
| Y46H3D.5a.2 | |||||||||
| Y46H3D.5b.1 | |||||||||
| Other_name | CELE_Y46H3D.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-110 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00003700 | |||||
| WormFlux | gene | WBGene00003700 | |||||||
| NDB | locus_tag | CELE_Y46H3D.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003700|UniProtKB=H2KZT0 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 178651 | |||||||
| RefSeq | protein | NM_001047730.4 | |||||||
| NM_001392479.1 | |||||||||
| TrEMBL | UniProtAcc | H2KZT0 | |||||||
| Q966B9 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZT0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00037139 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022518 | ||||||||
| 00022519 | |||||||||
| 00022520 | |||||||||
| 00111597 | |||||||||
| 00111598 | |||||||||
| 00111599 | |||||||||
| 00111600 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Concise_description | nhr-110 encodes a member of the nuclear hormone receptor family. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46H3D.5a | |||||||
| Y46H3D.5b | |||||||||
| Corresponding_CDS_history | Y46H3D.5:wp98 | ||||||||
| Y46H3D.5:wp137 | |||||||||
| Y46H3D.5:wp150 | |||||||||
| Corresponding_transcript | Y46H3D.5a.1 | ||||||||
| Y46H3D.5a.2 | |||||||||
| Y46H3D.5b.1 | |||||||||
| Associated_feature | WBsf668765 | ||||||||
| WBsf233344 | |||||||||
| WBsf233345 | |||||||||
| Transcription_factor | WBTranscriptionFactor000561 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00107342 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037150 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056719 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092927 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016672 | ||||||||
| Expr1160188 | |||||||||
| Expr2014008 | |||||||||
| Expr2032248 | |||||||||
| Drives_construct | WBCnstr00035934 | ||||||||
| Construct_product | WBCnstr00035934 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction | WBInteraction000535309 | ||||||||
| Map_info | Map | V | Position | -17.8571 | Error | 0.007183 | |||
| Positive | Positive_clone | Y46H3D | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00059839 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
