WormBase Tree Display for Gene: WBGene00003836
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| WBGene00003836 | Evidence | Accession_evidence | EMBL | AF156960 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y71F9AM | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nxt-1 | |||||||
| Sequence_name | Y71F9AM.5 | ||||||||
| Molecular_name | Y71F9AM.5a | ||||||||
| Y71F9AM.5a.1 | |||||||||
| CE26780 | |||||||||
| Y71F9AM.5b | |||||||||
| CE41072 | |||||||||
| Y71F9AM.5b.1 | |||||||||
| Other_name | NXT1 | Accession_evidence | EMBL | AF156960 | |||||
| CELE_Y71F9AM.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | nxt-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00003836 | |||||
| WormFlux | gene | WBGene00003836 | |||||||
| NDB | locus_tag | CELE_Y71F9AM.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003836|UniProtKB=Q9U757 | |||||||
| family | PTHR12612 | ||||||||
| NCBI | gene | 171866 | |||||||
| RefSeq | protein | NM_058676.6 | |||||||
| NM_001129079.3 | |||||||||
| SwissProt | UniProtAcc | Q9U757 | |||||||
| TREEFAM | TREEFAM_ID | TF318944 | |||||||
| TrEMBL | UniProtAcc | G8JYG1 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U757 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nxt | ||||||||
| Allele (39) | |||||||||
| Possibly_affected_by | WBVar02158631 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP1076 | ||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00004305 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nuclear pore central transport channel. Is an ortholog of human NXT1 (nuclear transport factor 2 like export factor 1) and NXT2 (nuclear transport factor 2 like export factor 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71F9AM.5a | |||||||
| Y71F9AM.5b | |||||||||
| Corresponding_CDS_history | Y71F9AM.5:wp175 | ||||||||
| Corresponding_transcript | Y71F9AM.5a.1 | ||||||||
| Y71F9AM.5b.1 | |||||||||
| Other_sequence | CBC00607_1 | ||||||||
| HBC08563_1 | |||||||||
| ES410216.1 | |||||||||
| CR04970 | |||||||||
| PPC01131_1 | |||||||||
| Tcir_isotig16706 | |||||||||
| Tcir_isotig14299 | |||||||||
| CRC08336_1 | |||||||||
| Tcir_isotig11522 | |||||||||
| Associated_feature | WBsf643123 | ||||||||
| WBsf217353 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1024021 | ||||||||
| Expr1031809 | |||||||||
| Expr1161585 | |||||||||
| Expr2014536 | |||||||||
| Expr2032775 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | I | Position | -5.28307 | Error | 0.002879 | |||
| Positive | Positive_clone | Y71F9AM | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063416 | |||||||||
| WBPaper00065780 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
