WormBase Tree Display for Gene: WBGene00003846
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| WBGene00003846 | SMap | S_parent | Sequence | C34H3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | odd-2 | Person_evidence | WBPerson539 | |||||
| Sequence_name | C34H3.2 | ||||||||
| Molecular_name | C34H3.2 | ||||||||
| C34H3.2.1 | |||||||||
| CE23571 | |||||||||
| Other_name | CELE_C34H3.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | odd-2 | ||||||||
| DB_info | Database | AceView | gene | XG778 | |||||
| WormQTL | gene | WBGene00003846 | |||||||
| WormFlux | gene | WBGene00003846 | |||||||
| NDB | locus_tag | CELE_C34H3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003846|UniProtKB=Q9N5X6 | |||||||
| family | PTHR14196 | ||||||||
| NCBI | gene | 183219 | |||||||
| RefSeq | protein | NM_076631.5 | |||||||
| SwissProt | UniProtAcc | Q9N5X6 | |||||||
| TREEFAM | TREEFAM_ID | TF350876 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N5X6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | odd | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095666 | ||||||||
| 00095667 | |||||||||
| 00095668 | |||||||||
| 00095669 | |||||||||
| 00095670 | |||||||||
| 00095671 | |||||||||
| 00095672 | |||||||||
| 00095673 | |||||||||
| 00095674 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00003845 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | odd-2 encodes a protein with homology to the Drosophila ODD-SKIPPED family members and affects larval viability; expressed in the intestine. | Paper_evidence | WBPaper00017018 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in intestine. Is an ortholog of human OSR1 (odd-skipped related transcription factor 1) and OSR2 (odd-skipped related transciption factor 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34H3.2 | |||||||
| Corresponding_transcript | C34H3.2.1 | ||||||||
| Other_sequence | JI174974.1 | ||||||||
| CBC08869_1 | |||||||||
| EX911472.1 | |||||||||
| HBC24743_1 | |||||||||
| JI461872.1 | |||||||||
| JI475436.1 | |||||||||
| Associated_feature (13) | |||||||||
| Transcription_factor | WBTranscriptionFactor000968 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr2899 | ||||||||
| Expr16349 | |||||||||
| Expr1013718 | |||||||||
| Expr1031814 | |||||||||
| Expr1145942 | |||||||||
| Expr1200148 | |||||||||
| Expr2014606 | |||||||||
| Expr2032839 | |||||||||
| Drives_construct | WBCnstr00011012 | ||||||||
| WBCnstr00035834 | |||||||||
| WBCnstr00042968 | |||||||||
| Construct_product | WBCnstr00016799 | ||||||||
| WBCnstr00035834 | |||||||||
| WBCnstr00042968 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | X | Position | -3.54974 | Error | 0.031919 | |||
| Positive | Positive_clone | C34H3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Sequence connection from [Strohmaier K, Rothman JH] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
