WormBase Tree Display for Gene: WBGene00003939
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| WBGene00003939 | Evidence | Person_evidence | WBPerson96 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_II | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pax-3 | Person_evidence | WBPerson96 | |||||
| Sequence_name | F27E5.2 | ||||||||
| Molecular_name | F27E5.2 | ||||||||
| F27E5.2.1 | |||||||||
| CE35862 | |||||||||
| Other_name | CELE_F27E5.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pax-3 | ||||||||
| DB_info | Database | AceView | gene | 2K439 | |||||
| WormFlux | gene | WBGene00003939 | |||||||
| NDB | locus_tag | CELE_F27E5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003939|UniProtKB=G5ED66 | |||||||
| family | PTHR45636 | ||||||||
| NCBI | gene | 185022 | |||||||
| RefSeq | protein | NM_063788.3 | |||||||
| SwissProt | UniProtAcc | G5ED66 | |||||||
| TREEFAM | TREEFAM_ID | TF351610 | |||||||
| UniProt_GCRP | UniProtAcc | G5ED66 | |||||||
| OMIM | gene | 167410 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pax | ||||||||
| Allele | WBVar00239252 | Inferred_automatically | From strain object: NL746 | ||||||
| WBVar01499702 | |||||||||
| WBVar00228215 | |||||||||
| WBVar00228216 | |||||||||
| WBVar01498435 | |||||||||
| WBVar01310659 | |||||||||
| WBVar01310660 | |||||||||
| WBVar01310661 | |||||||||
| WBVar01310663 | |||||||||
| WBVar01310664 | |||||||||
| WBVar01310665 | |||||||||
| WBVar01982649 | |||||||||
| WBVar01310666 | |||||||||
| WBVar02130594 | |||||||||
| WBVar01310667 | |||||||||
| WBVar01310668 | |||||||||
| WBVar01310669 | |||||||||
| WBVar01310670 | |||||||||
| WBVar01310671 | |||||||||
| WBVar00268938 | |||||||||
| WBVar00375540 | |||||||||
| WBVar00375541 | |||||||||
| WBVar00375542 | |||||||||
| WBVar00375543 | |||||||||
| WBVar00375544 | |||||||||
| WBVar00375545 | |||||||||
| WBVar01439362 | |||||||||
| WBVar00375546 | |||||||||
| WBVar01439363 | |||||||||
| WBVar01439365 | |||||||||
| WBVar00375547 | |||||||||
| WBVar01720525 | |||||||||
| WBVar00375548 | |||||||||
| WBVar00375549 | |||||||||
| WBVar01720526 | |||||||||
| WBVar01492772 | |||||||||
| WBVar01720527 | |||||||||
| WBVar00375550 | |||||||||
| WBVar00375551 | |||||||||
| WBVar00375552 | |||||||||
| WBVar00760692 | |||||||||
| WBVar00760693 | |||||||||
| WBVar00760694 | |||||||||
| WBVar00760695 | |||||||||
| WBVar00760696 | |||||||||
| WBVar00760697 | |||||||||
| WBVar00760698 | |||||||||
| WBVar00760699 | |||||||||
| WBVar00760700 | |||||||||
| WBVar00760701 | |||||||||
| WBVar00760702 | |||||||||
| WBVar00760703 | |||||||||
| WBVar00760704 | |||||||||
| WBVar00760705 | |||||||||
| WBVar01902612 | |||||||||
| WBVar00760706 | |||||||||
| WBVar00760707 | |||||||||
| WBVar01413849 | |||||||||
| WBVar00174934 | |||||||||
| WBVar00760708 | |||||||||
| WBVar00760709 | |||||||||
| WBVar00760710 | |||||||||
| WBVar00760711 | |||||||||
| WBVar01989305 | |||||||||
| WBVar00760712 | |||||||||
| WBVar00760713 | |||||||||
| WBVar00760714 | |||||||||
| WBVar00760715 | |||||||||
| WBVar00760716 | |||||||||
| WBVar00760717 | |||||||||
| WBVar00760718 | |||||||||
| WBVar00760719 | |||||||||
| WBVar00760720 | |||||||||
| WBVar00760721 | |||||||||
| WBVar00760722 | |||||||||
| WBVar00760723 | |||||||||
| WBVar00760724 | |||||||||
| WBVar00760725 | |||||||||
| WBVar00760726 | |||||||||
| WBVar00760727 | |||||||||
| WBVar00254233 | |||||||||
| WBVar00760728 | |||||||||
| WBVar00760729 | |||||||||
| WBVar00760730 | |||||||||
| WBVar00760731 | |||||||||
| WBVar00760732 | |||||||||
| WBVar00760733 | |||||||||
| WBVar00760734 | |||||||||
| WBVar00760735 | |||||||||
| WBVar00760736 | |||||||||
| WBVar00250736 | |||||||||
| WBVar00760737 | |||||||||
| WBVar00760738 | |||||||||
| WBVar00760739 | |||||||||
| WBVar00760740 | |||||||||
| WBVar00760741 | |||||||||
| WBVar00760742 | |||||||||
| WBVar00760743 | |||||||||
| WBVar00760744 | |||||||||
| WBVar00760745 | |||||||||
| WBVar00760746 | |||||||||
| WBVar00760747 | |||||||||
| WBVar00760748 | |||||||||
| WBVar02040475 | |||||||||
| WBVar02040477 | |||||||||
| WBVar01943443 | |||||||||
| WBVar00307706 | |||||||||
| WBVar00298259 | |||||||||
| WBVar01498940 | |||||||||
| Strain | WBStrain00028931 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (46) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; PAX-3 is required for locomotion and vulval development; pax-3(RNAi) animals have consistent Pvl and Unc phenotypes (as well as less consistent Bmd, Rup, and Stp phenotypes). | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00012756 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in epidermal cell fate specification; gonad morphogenesis; and hemidesmosome assembly. Located in nucleus. Expressed in several structures, including AB lineage cell; E lineage cell; P9/10L; hypodermal cell; and tail. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma and congenital myopathy 19. Is an ortholog of human PAX7 (paired box 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081351 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8621) | ||||
| DOID:4051 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8621) | ||||||
| Molecular_info | Corresponding_CDS | F27E5.2 | |||||||
| Corresponding_CDS_history | F27E5.2:wp111 | ||||||||
| Corresponding_transcript | F27E5.2.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (18) | |||||||||
| Transcription_factor | WBTranscriptionFactor000298 | ||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00005879 | ||||||||
| WBCnstr00005880 | |||||||||
| WBCnstr00005881 | |||||||||
| WBCnstr00005882 | |||||||||
| WBCnstr00012916 | |||||||||
| WBCnstr00014228 | |||||||||
| WBCnstr00015305 | |||||||||
| WBCnstr00015306 | |||||||||
| WBCnstr00035784 | |||||||||
| Construct_product | WBCnstr00035784 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (139) | |||||||||
| Map_info | Map | II | Position | 2.03217 | Error | 0.043029 | |||
| Positive | Positive_clone | F27E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5093 | |||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
