WormBase Tree Display for Gene: WBGene00004028
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| WBGene00004028 | Evidence | Accession_evidence | EMBL | AB015041 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y18H1A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pif-1 | Person_evidence | WBPerson334 | |||||
| Sequence_name | Y18H1A.6 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | cePIF1 | Accession_evidence | EMBL | AB015041 | |||||
| CELE_Y18H1A.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pif-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pif | ||||||||
| Allele (175) | |||||||||
| Strain | WBStrain00003036 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | pif-1 encodes a DNA-dependent ATPase and 5'-3' DNA helicase orthologous to Saccharomyces Pif1p and vertebrate PIF1; by homology, PIF-1 is predicted to function in maintenance of both mitochondrial and nuclear genome integrity; PIF-1 is also predicted to function as a negative regulator of telomerase activity that acts by displacing telomerase from the ends of DNA; loss of pif-1 activity via RNAi results in induction of the mitochondrial unfolded protein response. | Paper_evidence | WBPaper00028575 | |||||
| WBPaper00031057 | |||||||||
| WBPaper00024269 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 10 Apr 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable 5'-3' DNA helicase activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to be located in replication fork. Is an ortholog of human PIF1 (PIF1 5'-to-3' DNA helicase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y18H1A.6a | |||||||
| Y18H1A.6b | |||||||||
| Y18H1A.6c | |||||||||
| Y18H1A.6d | |||||||||
| Corresponding_transcript | Y18H1A.6a.1 | ||||||||
| Y18H1A.6b.1 | |||||||||
| Y18H1A.6c.1 | |||||||||
| Y18H1A.6d.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf643027 | ||||||||
| WBsf655866 | |||||||||
| WBsf982562 | |||||||||
| WBsf217156 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055630 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116555 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004551 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084348 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028232 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004550 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004552 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075580 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062421 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055629 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1274 | ||||||||
| Expr6905 | |||||||||
| Expr1012832 | |||||||||
| Expr1031930 | |||||||||
| Expr1159144 | |||||||||
| Expr2014920 | |||||||||
| Expr2033155 | |||||||||
| Drives_construct | WBCnstr00003536 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (156) | |||||||||
| Interaction (52) | |||||||||
| Map_info | Map | I | Position | -18.5478 | Error | 0.046141 | |||
| Positive | Positive_clone | Y18H1A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024269 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
