WormBase Tree Display for Gene: WBGene00004075

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WBGene00004075	SMap	S_parent	Sequence	CHROMOSOME_III
	Identity	Version	1
		Name	CGC_name	pod-1	Person_evidence	WBPerson26
			Sequence_name	Y76A2B.1
			Molecular_name (14)
			Other_name	CELE_Y76A2B.1	Accession_evidence	NDB	BX284603
			Public_name	pod-1
		DB_info	Database	AceView	gene	3O604
				WormQTL	gene	WBGene00004075
				SignaLink	protein	WBGene00004075
				WormFlux	gene	WBGene00004075
				NDB	locus_tag	CELE_Y76A2B.1
				Panther	gene	CAEEL\|WormBase=WBGene00004075\|UniProtKB=K8ESK9
					family	PTHR10856
				NCBI	gene	176784
				RefSeq	protein	NM_067396.6
						NM_001276806.2
						NM_001276804.3
						NM_001276805.5
				TrEMBL	UniProtAcc	K8FE00
						K8ESK9
						K8F7Z0
						G5EDS2
				UniProt_GCRP	UniProtAcc	K8ESK9
		Species	Caenorhabditis elegans
		History	Version_change	1	07 Apr 2004 11:29:34	WBPerson1971	Event	Imported	Initial conversion from geneace
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	pod
		Allele (123)
		Strain	WBStrain00008566
			WBStrain00051669
			WBStrain00051678
			WBStrain00055432
		RNASeq_FPKM (74)
		GO_annotation (11)
		Contained_in_operon	CEOP3808
		Ortholog (35)
		Paralog	WBGene00000768	Caenorhabditis elegans	From_analysis	TreeFam
						Panther
						WormBase-Compara
		Structured_description	Concise_description	The pod-1 gene encodes a coronin-like protein required for asymmetry along the anterior-posterior axis at the beginning of embryonic development.	Paper_evidence	WBPaper00002796
						WBPaper00003758
					Curator_confirmed	WBPerson567
					Date_last_updated	17 Jun 2004 00:00:00
			Automated_description	Enables actin filament binding activity. Located in cell cortex of cell tip and cleavage furrow. Is an ortholog of human CORO7 (coronin 7).	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	Y76A2B.1a
			Y76A2B.1b
			Y76A2B.1c
			Y76A2B.1d
		Corresponding_transcript	Y76A2B.1a.1
			Y76A2B.1b.1
			Y76A2B.1c.1
			Y76A2B.1c.2
			Y76A2B.1d.1
			Y76A2B.1d.2
		Other_sequence (49)
		Associated_feature (16)
	Experimental_info	RNAi_result	WBRNAi00058485	Inferred_automatically	RNAi_primary
			WBRNAi00085845	Inferred_automatically	RNAi_primary
			WBRNAi00113793	Inferred_automatically	RNAi_primary
			WBRNAi00115698	Inferred_automatically	RNAi_primary
			WBRNAi00078554	Inferred_automatically	RNAi_primary
			WBRNAi00091269	Inferred_automatically	RNAi_primary
			WBRNAi00009425	Inferred_automatically	RNAi_primary
			WBRNAi00058486	Inferred_automatically	RNAi_primary
			WBRNAi00026959	Inferred_automatically	RNAi_primary
			WBRNAi00027877	Inferred_automatically	RNAi_primary
		Expr_pattern	Expr1162
			Expr1015426
			Expr1031964
			Expr1161898
			Expr2014987
			Expr2033222
		Antibody	WBAntibody00000245
			WBAntibody00000881
		Microarray_results (24)
		Expression_cluster	WBPaper00036375:enriched_in_PVD_OLL
			WBPaper00037047:aging_accelerated_insoluble_protein
			WBPaper00037047:insoluble_protein
			WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
			WBPaper00037950:AVE-neuron_L1-larva_expressed
			WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
			WBPaper00044426:rotenone_24h_downregulated
			WBPaper00044616:alg-3-4_downregulated_gene
			WBPaper00044656:tatn-1(qd182)_downregulated
			WBPaper00044736:flat_dev_expression
			WBPaper00044746:aging_upregulated_Day5
			WBPaper00044746:aging_upregulated_HeatShock
			WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
			WBPaper00045420:fertilization_downregulated_transcript
			WBPaper00045521:Gender_Neutral
			WBPaper00045971:tunicamycin_upregulated_control
			WBPaper00046012:tdp-1(ok803)_downregulated
			WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
			WBPaper00046497:B.thuringiensis_upregulated_protein
			WBPaper00048785:heat-shock_downregulated
			WBPaper00048923:Aging_regulated
			WBPaper00048988:neuron_expressed
			WBPaper00049545:jmjd-3.1(+)_upregulated
			WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
			WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
			WBPaper00050488:adult_vs_dauer_regulated_N2_20C
			WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
			WBPaper00050522:mafr-1(tm6082)_downregulated
			WBPaper00050990:arcade_intestinal-valve_expressed
			WBPaper00050990:body-muscle_expressed
			WBPaper00050990:GABAergic-neuron_expressed
			WBPaper00050990:hypodermis_expressed
			WBPaper00050990:intestine_expressed
			WBPaper00050990:NMDA-neuron_expressed
			WBPaper00050990:seam_expressed
			WBPaper00051039:germline_enriched
			WBPaper00051245:body-wall-muscle_cytoplasm_expressed
			WBPaper00051245:epidermis_cytoplasm_expressed
			WBPaper00051245:epidermis_nucleus_expressed
			WBPaper00051245:intestine_cytoplasm_expressed
			WBPaper00051245:intestine_nucleus_expressed
			WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
			WBPaper00051265:F1_morc-1(tm6048)_downregulated
			WBPaper00052884:emb-4(hc60)_downregulated
			WBPaper00053184:sma-2(rax5)_downregulated
			WBPaper00053184:sma-4(rax3)_downregulated
			WBPaper00053388:dauer_regulated_Cluster2
			WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
			WBPaper00053615:SMO-1_target
			WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
			WBPaper00055049:S.gordonii_upregulated
			WBPaper00055226:ADR-2_target_N2
			WBPaper00055334:DLC-1_interacting
			WBPaper00055648:germline_expressed
			WBPaper00055971:nhl-2(ok818)_25C_upregulated
			WBPaper00056139:soil-microbiota_upregulated
			WBPaper00056275:P.aeruginosa_downregulated
			WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
			WBPaper00056284:ints-1(RNAi)_upregulated
			WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
			WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
			WBPaper00056471:S.aureus-4h_upregulated_N2
			WBPaper00056826:hmc_biased
			WBPaper00057288:iff-1(RNAi)_downregulated_transcript
			WBPaper00058691:set-2(bn129)_downregulated
			WBPaper00058691:sin-3(tm1276)_upregulated
			WBPaper00058725:sftb-1(cer39)_downregulated
			WBPaper00058958:100mGy-irradiation-72h_upregulated
			WBPaper00059174:MEG-3_interacting
			WBPaper00059174:PGL-1_interacting
			WBPaper00059471:EGL-43_interacting
			WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
			WBPaper00059987:Wounding_upregulated
			WBPaper00060100:SiNP_upregulated_mRNA
			WBPaper00060683:hlh-11(ko1)_downregulated
			WBPaper00060811:L1_vs_adult_downregulated_neural
			WBPaper00060909:atfs-1(cmh15)_upregulated
			WBPaper00061007:S.aquatilis_downregulated
			WBPaper00061274:microgravity_upregulated
			WBPaper00061340:AIB
			WBPaper00061340:AVA
			WBPaper00061340:AVD
			WBPaper00061340:AVG
			WBPaper00061340:AVJ
			WBPaper00061340:AVK
			WBPaper00061340:DD
			WBPaper00061340:DVA
			WBPaper00061340:DVC
			WBPaper00061340:I5
			WBPaper00061340:Parent_of_g1P_I3
			WBPaper00061340:RIA
			WBPaper00061340:RIM
			WBPaper00061340:RIV
			WBPaper00061340:RMD
			WBPaper00061340:SIA
			WBPaper00061340:SIB
			WBPaper00061340:SMB
			WBPaper00061340:SMD
			WBPaper00061466:nath-10(icb99)_upregulated
			WBPaper00061466:nath-10(icb102)_upregulated
			WBPaper00061478:SUMO-conjugated_protein
			WBPaper00061527:npp-8_4368-E01B7.1_7741
			WBPaper00061651:PVD_enriched
			WBPaper00061651:VC_enriched
			WBPaper00062325:muscle_depleted_coding-RNA
			WBPaper00062498:PPM-1.D_interacting
			WBPaper00062554:MAGU-2_interacting
			WBPaper00062669:extracellular-vesicle_protein
			WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
			WBPaper00064071:NHR-49_interacting
			WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
			WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
			WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
			WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
			WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
			WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
			WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
			WBPaper00064315:mes-4(bn73)_downregulated_PGCs
			WBPaper00064716:paraquat_upregulated
			WBPaper00065120:body-muscle-transcriptome
			WBPaper00065158:AFD_depleted
			WBPaper00065373:Cisplatin_upregulated_WT
			WBPaper00065373:sek-1(km4)_downregulated_cisplatin
			WBPaper00065373:sek-1(km4)_upregulated_Ref
			cgc4489_group_25
			WBPaper00031252:AIN-1_IP_enriched
			WBPaper00031532:Larva_Pan_Neuronal_Depleted
			WBPaper00031832:slr-2_regulated
			WBPaper00032165:differentially_expressed_with_age_medoid_1
			WBPaper00034661:AgNPs_downregulated
			WBPaper00035905:FBF-1_Associated
			WBPaper00036286:Pattern_B
			WBPaper00037611:GLD-2-associated
			WBPaper00040821:Au-NP_regulated
			WBPaper00040858:eQTL_regulated_developing
			WBPaper00040858:eQTL_regulated_juvenile
			WBPaper00041606:CE_X.nematophila_regulated
			WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
			[cgc6390]:Cluster_F
		Interaction (57)
	Map_info	Map	III	Position	21.2562	Error	0.002167
		Positive	Positive_clone	Y76A2B	Inferred_automatically	From sequence, transcript, pseudogene data
		Mapping_data	Multi_point	5295
				5609
			Pos_neg_data	10545
	Reference (28)
	Remark	Gmap position has to be right of eP81, left of unc-64 based on clone map and fmap. [sdm 000908].it also helps define left end of tDf10 which deletes it [Schnabel H. 000908]
		Seuence connection from [Rappleye CA, Aroian RV]
	Method	Gene