WormBase Tree Display for Gene: WBGene00004146
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| WBGene00004146 | SMap | S_parent | Sequence | T06E4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-63 | Person_evidence | WBPerson625 | |||||
| Sequence_name | T06E4.11 | ||||||||
| Molecular_name | T06E4.11 | ||||||||
| T06E4.11.1 | |||||||||
| CE46764 | |||||||||
| Other_name | CELE_T06E4.11 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pqn-63 | ||||||||
| DB_info | Database | AceView | gene | 5K95 | |||||
| WormQTL | gene | WBGene00004146 | |||||||
| WormFlux | gene | WBGene00004146 | |||||||
| NDB | locus_tag | CELE_T06E4.11 | |||||||
| NCBI | gene | 188181 | |||||||
| RefSeq | protein | NM_073078.6 | |||||||
| TREEFAM | TREEFAM_ID | TF350596 | |||||||
| TrEMBL | UniProtAcc | Q22265 | |||||||
| UniProt_GCRP | UniProtAcc | Q22265 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABarpapaaa; ABplaaaaaa; ABplpaaapa; ASE; and cholinergic neurons based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-nine chemicals including cholesterol; lathosterol; and hydrogen sulfide based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T06E4.11 | |||||||
| Corresponding_CDS_history | T06E4.11:wp184 | ||||||||
| T06E4.11:wp228 | |||||||||
| Corresponding_transcript | T06E4.11.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf661577 | ||||||||
| WBsf1000954 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035270 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018298 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052653 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028540 | ||||||||
| Expr1032017 | |||||||||
| Expr1156257 | |||||||||
| Expr2015063 | |||||||||
| Expr2033298 | |||||||||
| Drives_construct | WBCnstr00035670 | ||||||||
| Construct_product | WBCnstr00035670 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (190) | |||||||||
| Interaction | WBInteraction000226552 | ||||||||
| WBInteraction000233318 | |||||||||
| WBInteraction000239825 | |||||||||
| WBInteraction000267093 | |||||||||
| WBInteraction000369469 | |||||||||
| WBInteraction000421103 | |||||||||
| WBInteraction000422966 | |||||||||
| WBInteraction000432495 | |||||||||
| WBInteraction000437246 | |||||||||
| WBInteraction000437720 | |||||||||
| Map_info | Map | V | Position | 2.05627 | Error | 0.000512 | |||
| Positive | Positive_clone | T06E4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
