WormBase Tree Display for Gene: WBGene00004207
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| WBGene00004207 | SMap | S_parent | Sequence | D2089 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptb-1 | Person_evidence | WBPerson297 | |||||
| Sequence_name | D2089.4 | ||||||||
| Molecular_name | D2089.4a | ||||||||
| D2089.4a.1 | |||||||||
| CE30508 | |||||||||
| D2089.4b | |||||||||
| CE30509 | |||||||||
| D2089.4b.1 | |||||||||
| Other_name | CELE_D2089.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ptb-1 | ||||||||
| DB_info | Database | AceView | gene | 2K979 | |||||
| WormQTL | gene | WBGene00004207 | |||||||
| WormFlux | gene | WBGene00004207 | |||||||
| NDB | locus_tag | CELE_D2089.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004207|UniProtKB=Q18999 | |||||||
| family | PTHR15592 | ||||||||
| NCBI | gene | 174647 | |||||||
| RefSeq | protein | NM_171036.7 | |||||||
| NM_171035.7 | |||||||||
| TREEFAM | TREEFAM_ID | TF319824 | |||||||
| TrEMBL | UniProtAcc | Q8T3E6 | |||||||
| Q18999 | |||||||||
| UniProt_GCRP | UniProtAcc | Q18999 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptb | ||||||||
| Allele (241) | |||||||||
| Strain | WBStrain00001261 | ||||||||
| WBStrain00001262 | |||||||||
| WBStrain00001728 | |||||||||
| WBStrain00035521 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00016624 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | ptb-1 encodes the C. elegans ortholog of the polypyrimidine tract binding protein PTB. | Paper_evidence | WBPaper00003988 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 20 Mar 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of RNA splicing. Predicted to be located in nucleus. Expressed in several structures, including amphid neurons; head; muscle cell; somatic gonad; and tail. Is an ortholog of human PTBP1 (polypyrimidine tract binding protein 1); PTBP2 (polypyrimidine tract binding protein 2); and PTBP3 (polypyrimidine tract binding protein 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D2089.4a | |||||||
| D2089.4b | |||||||||
| Corresponding_CDS_history | D2089.4:wp77 | ||||||||
| Corresponding_transcript | D2089.4a.1 | ||||||||
| D2089.4b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (49) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00066342 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043511 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030423 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00002156 | ||||||||
| WBCnstr00002157 | |||||||||
| WBCnstr00004238 | |||||||||
| WBCnstr00011910 | |||||||||
| WBCnstr00035637 | |||||||||
| WBCnstr00038021 | |||||||||
| WBCnstr00038022 | |||||||||
| Construct_product | WBCnstr00035637 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (192) | |||||||||
| Interaction (96) | |||||||||
| Map_info | Map | II | Position | 3.12332 | Error | 0.000105 | |||
| Positive | Positive_clone | D2089 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4610 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003988 | ||||||||
| WBPaper00028592 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
