WormBase Tree Display for Gene: WBGene00004220

WBGene00004220 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C53C11
  Identity: Version: 1
    Name: CGC_name: ptr-5 Person_evidence: WBPerson349
      Sequence_name: C53C11.3
      Molecular_name: C53C11.3
        C53C11.3.1
        CE34277
      Other_name: CELE_C53C11.3 Accession_evidence: NDB BX284606
      Public_name: ptr-5
    DB_info: Database: AceView gene XR939
        WormQTL gene WBGene00004220
        WormFlux gene WBGene00004220
        NDB locus_tag CELE_C53C11.3
        Panther gene CAEEL|WormBase=WBGene00004220|UniProtKB=P91184
          family PTHR10796
        NCBI gene 181764
        RefSeq protein NM_078409.9
        TREEFAM TREEFAM_ID TF331806
        TrEMBL UniProtAcc P91184
        UniProt_GCRP UniProtAcc P91184
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ptr
    Allele (99)
    Strain: WBStrain00036296
    RNASeq_FPKM (74)
    GO_annotation: 00050214
      00050215
      00050216
      00050217
      00050218
      00050219
      00112510
    Ortholog (31)
    Paralog (30)
    Structured_description: Concise_description: ptr-5 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-5 isweakly required for normal molting from L4 to adult stages; PTR-5 isalso required for normal growth to full size and locomotion; PTR-5 isexpressed in head and tail neurons, and in ventral nerve cord. Paper_evidence: WBPaper00006525
            WBPaper00026841
            WBPaper00027263
          Curator_confirmed: WBPerson567
          Date_last_updated: 08 Nov 2006 00:00:00
      Automated_description: Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C53C11.3
    Corresponding_CDS_history: C53C11.3:wp102
    Corresponding_transcript: C53C11.3.1
    Other_sequence (20)
    Associated_feature (17)
  Experimental_info: RNAi_result: WBRNAi00076913 Inferred_automatically: RNAi_primary
      WBRNAi00076945 Inferred_automatically: RNAi_primary
      WBRNAi00012355 Inferred_automatically: RNAi_primary
      WBRNAi00043086 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr5578
      Expr1025959
      Expr1032076
      Expr1147049
      Expr2015172
      Expr2033410
    Drives_construct: WBCnstr00003062
    Microarray_results (19)
    Expression_cluster (142)
    Interaction: WBInteraction000358808
      WBInteraction000369593
      WBInteraction000440688
  Map_info: Map: X Position: 24.088 Error: 0.000535
    Positive: Positive_clone: C53C11 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5589
        4748
        5259
    Pseudo_map_position
  Reference: WBPaper00004265
    WBPaper00026841
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene