WormBase Tree Display for Gene: WBGene00004307
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| WBGene00004307 | Evidence | Author_evidence | Zwartkruis F | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C27B7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rap-1 | Person_evidence | WBPerson490 | |||||
| Sequence_name | C27B7.8 | ||||||||
| Molecular_name | C27B7.8 | ||||||||
| C27B7.8.1 | |||||||||
| CE03037 | |||||||||
| Other_name | rrp-1 | Author_evidence | Zwartkruis F | ||||||
| CELE_C27B7.8 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | rap-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rap | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00007655 | ||||||||
| WBStrain00007656 | |||||||||
| WBStrain00035168 | |||||||||
| WBStrain00024306 | |||||||||
| WBStrain00051648 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (48) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Concise_description | rap-1 encodes a member of the Ras superfamily of small GTPases; the activated protein interacts with W05B10.4 and T14G10.2 in yeast two-hybrid assays and rap-1 is expressed in some neurons in the head and tail, the rectal epithelial cells, body muscle, hypodermis, and in the somatic cells of the gonad. | Paper_evidence | WBPaper00011383 | |||||
| WBPaper00011386 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Involved in collagen and cuticulin-based cuticle development and epidermis development. Predicted to be located in plasma membrane. Expressed in several structures, including germ line; gonad; and neurons. Is an ortholog of human RAP1A (RAP1A, member of RAS oncogene family) and RAP1B (RAP1B, member of RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1588 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9857) | ||||
| Molecular_info | Corresponding_CDS | C27B7.8 | |||||||
| Corresponding_transcript | C27B7.8.1 | ||||||||
| Other_sequence (46) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr5350 | ||||||||
| Expr12382 | |||||||||
| Expr13836 | |||||||||
| Expr13938 | |||||||||
| Expr1026296 | |||||||||
| Expr1032132 | |||||||||
| Expr1145365 | |||||||||
| Expr2015255 | |||||||||
| Expr2033489 | |||||||||
| Drives_construct | WBCnstr00000155 | ||||||||
| WBCnstr00004047 | |||||||||
| WBCnstr00004967 | |||||||||
| WBCnstr00004968 | |||||||||
| WBCnstr00035575 | |||||||||
| WBCnstr00040194 | |||||||||
| Construct_product | WBCnstr00000155 | ||||||||
| WBCnstr00004967 | |||||||||
| WBCnstr00004968 | |||||||||
| WBCnstr00035575 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (121) | |||||||||
| Map_info | Map | IV | Position | 3.99974 | Error | 2e-05 | |||
| Positive | Positive_clone | C27B7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | This rap-1 is not the same as the other_name (rap-1) of rpy-1 (C18H9.7) | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
