WormBase Tree Display for Gene: WBGene00004355
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| WBGene00004355 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T07D4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rha-1 | |||||||
| Sequence_name | T07D4.3 | ||||||||
| Molecular_name | T07D4.3a | ||||||||
| T07D4.3a.1 | |||||||||
| CE39177 | |||||||||
| T07D4.3b | |||||||||
| CE52964 | |||||||||
| T07D4.3b.1 | |||||||||
| Other_name | CELE_T07D4.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rha-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rha | ||||||||
| Allele (71) | |||||||||
| Strain | WBStrain00023601 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (46) | |||||||||
| Contained_in_operon | CEOP2706 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00003389 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003392 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003393 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018967 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009922 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022056 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015525 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021365 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022433 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020263 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rha-1 encodes an ATP-dependent DEAD/H box RNA helicase orthologous to human RNA helicase A and Drosophila Maleless, an essential component of the dosage compensation machinery required for increased X-linked transcription in males; by homology, RHA-1 is predicted to function in regulation of transcription, translation, RNA processing, and/or RNA replication; in C. elegans, RHA-1 is required for germ cell proliferation, normal germ cell nuclear morphology, RNA-mediated interference (RNAi) of germline-expressed genes, and silencing of germline-expressed transgenes. | Paper_evidence | WBPaper00004587 | |||||
| WBPaper00005486 | |||||||||
| WBPaper00019034 | |||||||||
| WBPaper00025077 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 27 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP hydrolysis activity; helicase activity; and nucleic acid binding activity. Involved in germ cell development and negative regulation of gene expression, epigenetic. Predicted to be located in nucleolus. Predicted to be part of ribonucleoprotein complex. Expressed in germ line and oocyte. Is an ortholog of human DHX9 (DExH-box helicase 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07D4.3a | |||||||
| T07D4.3b | |||||||||
| Corresponding_CDS_history | T07D4.3:wp149 | ||||||||
| Corresponding_transcript | T07D4.3a.1 | ||||||||
| T07D4.3b.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf665858 | ||||||||
| WBsf665859 | |||||||||
| WBsf665860 | |||||||||
| WBsf988846 | |||||||||
| WBsf988847 | |||||||||
| WBsf1012763 | |||||||||
| WBsf223564 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00069461 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00077916 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007668 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075510 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052759 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018368 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082643 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083634 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002222 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083734 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3232 | ||||||||
| Expr3233 | |||||||||
| Expr1020604 | |||||||||
| Expr1032172 | |||||||||
| Expr1156368 | |||||||||
| Expr2015332 | |||||||||
| Expr2033566 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (199) | |||||||||
| Map_info | Map | II | Position | 0.916777 | Error | 0.002025 | |||
| Positive | Positive_clone | T07D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4472 | |||||||
| 4635 | |||||||||
| 4659 | |||||||||
| 5550 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Sequence connection from [Walstrom KM] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
