WormBase Tree Display for Gene: WBGene00004417
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| WBGene00004417 | SMap | S_parent | Sequence | R151 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-6 | |||||||
| Sequence_name | R151.3 | ||||||||
| Molecular_name | R151.3 | ||||||||
| R151.3.1 | |||||||||
| CE00744 | |||||||||
| Other_name | CELE_R151.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpl-6 | ||||||||
| DB_info | Database | AceView | gene | 3I299 | |||||
| WormQTL | gene | WBGene00004417 | |||||||
| WormFlux | gene | WBGene00004417 | |||||||
| NDB | locus_tag | CELE_R151.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004417|UniProtKB=P47991 | |||||||
| family | PTHR10715 | ||||||||
| NCBI | gene | 176015 | |||||||
| RefSeq | protein | NM_066183.7 | |||||||
| SwissProt | UniProtAcc | P47991 | |||||||
| TREEFAM | TREEFAM_ID | TF300115 | |||||||
| UniProt_GCRP | UniProtAcc | P47991 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (24) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl6 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP3836 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Concise_description | rpl-6 encodes a large ribosomal subunit L6 protein. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in cytosol; ribosome; and rough endoplasmic reticulum. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL6 (ribosomal protein L6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R151.3 | |||||||
| Corresponding_transcript | R151.3.1 | ||||||||
| Other_sequence (335) | |||||||||
| Associated_feature | WBsf992959 | ||||||||
| WBsf992960 | |||||||||
| WBsf225212 | |||||||||
| WBsf225213 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1027038 | ||||||||
| Expr1032221 | |||||||||
| Expr1155619 | |||||||||
| Expr2015480 | |||||||||
| Expr2033715 | |||||||||
| Drives_construct | WBCnstr00035501 | ||||||||
| Construct_product | WBCnstr00035501 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction (235) | |||||||||
| Map_info | Map | III | Position | -0.769674 | Error | 0.000666 | |||
| Positive | Positive_clone | R151 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024230 | ||||||||
| WBPaper00027610 | |||||||||
| WBPaper00029008 | |||||||||
| WBPaper00035149 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00053133 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00065861 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
