WormBase Tree Display for Gene: WBGene00004462
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| WBGene00004462 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F57B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-6.1 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F57B9.10 | ||||||||
| Molecular_name | F57B9.10a | ||||||||
| F57B9.10a.1 | |||||||||
| CE25011 | |||||||||
| F57B9.10b | |||||||||
| CE38077 | |||||||||
| F57B9.10b.1 | |||||||||
| Other_name | rpn-6 | Person_evidence | WBPerson1551 | ||||||
| CELE_F57B9.10 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | rpn-6.1 | ||||||||
| DB_info | Database | AceView | gene | 3I50 | |||||
| WormQTL | gene | WBGene00004462 | |||||||
| WormFlux | gene | WBGene00004462 | |||||||
| NDB | locus_tag | CELE_F57B9.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004462|UniProtKB=Q20938 | |||||||
| family | PTHR10678 | ||||||||
| NCBI | gene | 175972 | |||||||
| RefSeq | protein | NM_001027451.6 | |||||||
| NM_001027450.5 | |||||||||
| SwissProt | UniProtAcc | Q20938 | |||||||
| TREEFAM | TREEFAM_ID | TF106230 | |||||||
| UniProt_GCRP | UniProtAcc | Q20938 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (41) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069681 | ||||||||
| 00069682 | |||||||||
| 00069683 | |||||||||
| 00069684 | |||||||||
| 00069685 | |||||||||
| 00069686 | |||||||||
| 00069687 | |||||||||
| 00069688 | |||||||||
| 00069689 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00000814 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010309 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpn-6.1 encodes a non-ATPase subunit of the 19S regulatory complex of the proteasome that affects adult viability, larval viability, embryonic viability, fertility, and osmoregulation. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00004888 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 26 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable structural molecule activity. Involved in determination of adult lifespan; proteasome assembly; and ubiquitin-dependent protein catabolic process. Located in nucleus. Expressed in intestine and pharynx. Is an ortholog of human PSMD11 (proteasome 26S subunit, non-ATPase 11). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57B9.10a | |||||||
| F57B9.10b | |||||||||
| Corresponding_CDS_history | F57B9.10:wp138 | ||||||||
| Corresponding_transcript | F57B9.10a.1 | ||||||||
| F57B9.10b.1 | |||||||||
| Other_sequence (103) | |||||||||
| Associated_feature | WBsf651152 | ||||||||
| WBsf651153 | |||||||||
| WBsf655446 | |||||||||
| WBsf226883 | |||||||||
| Experimental_info | RNAi_result (51) | ||||||||
| Expr_pattern | Expr10565 | ||||||||
| Expr1014570 | |||||||||
| Expr1032265 | |||||||||
| Expr1152587 | |||||||||
| Expr2015493 | |||||||||
| Expr2033728 | |||||||||
| Drives_construct | WBCnstr00015625 | ||||||||
| WBCnstr00037924 | |||||||||
| Construct_product | WBCnstr00015657 | ||||||||
| WBCnstr00018617 | |||||||||
| WBCnstr00037924 | |||||||||
| Antibody | WBAntibody00000652 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (183) | |||||||||
| Map_info | Map | III | Position | -0.873557 | Error | 0.000702 | |||
| Positive | Positive_clone | F57B9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
