WormBase Tree Display for Gene: WBGene00004469
expand all nodes | collapse all nodes | view schema
| WBGene00004469 | SMap | S_parent | Sequence | B0393 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-0 | |||||||
| Sequence_name | B0393.1 | ||||||||
| Molecular_name | B0393.1 | ||||||||
| B0393.1.1 | |||||||||
| CE00854 | |||||||||
| Other_name | CELE_B0393.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rps-0 | ||||||||
| DB_info | Database | AceView | gene | 3F842 | |||||
| WormQTL | gene | WBGene00004469 | |||||||
| WormFlux | gene | WBGene00004469 | |||||||
| NDB | locus_tag | CELE_B0393.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004469|UniProtKB=P46769 | |||||||
| family | PTHR11489 | ||||||||
| NCBI | gene | 175628 | |||||||
| RefSeq | protein | NM_065577.9 | |||||||
| SwissProt | UniProtAcc | P46769 | |||||||
| TREEFAM | TREEFAM_ID | TF300100 | |||||||
| UniProt_GCRP | UniProtAcc | P46769 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (18) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps0 using blastP | ||||||||
| Strain | WBStrain00002342 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP3897 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | rps-0 encodes a small ribosomal subunit SA protein that appears to function as both a ribosomal component and a laminin receptor; by homology, RPS-0 is predicted to play roles in protein biosynthesis and cell adhesion; in C. elegans, RPS-0 activity is required for embryonic and germline development, vulval morphogenesis, and the overall health of the animal. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00013192 | |||||||||
| WBPaper00013628 | |||||||||
| WBPaper00013636 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal small subunit assembly. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Expressed in tail. Is an ortholog of human RPSA (ribosomal protein SA). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0393.1 | |||||||
| Corresponding_transcript | B0393.1.1 | ||||||||
| Other_sequence (354) | |||||||||
| Associated_feature | WBsf650998 | ||||||||
| WBsf666823 | |||||||||
| WBsf666824 | |||||||||
| WBsf666825 | |||||||||
| WBsf226570 | |||||||||
| WBsf226571 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Chronogram79 | ||||||||
| Expr5060 | |||||||||
| Expr5061 | |||||||||
| Expr1026705 | |||||||||
| Expr1032272 | |||||||||
| Expr1143171 | |||||||||
| Expr2015503 | |||||||||
| Expr2033738 | |||||||||
| Drives_construct | WBCnstr00003011 | ||||||||
| WBCnstr00004500 | |||||||||
| WBCnstr00018965 | |||||||||
| WBCnstr00018966 | |||||||||
| WBCnstr00020735 | |||||||||
| WBCnstr00035461 | |||||||||
| Construct_product | WBCnstr00035461 | ||||||||
| Antibody | WBAntibody00002840 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (173) | |||||||||
| Interaction (441) | |||||||||
| Map_info | Map | III | Position | -2.5918 | Error | 0.004322 | |||
| Positive | Positive_clone | B0393 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
