WormBase Tree Display for Gene: WBGene00004475
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| WBGene00004475 | SMap | S_parent | Sequence | Y71A12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-6 | |||||||
| Sequence_name | Y71A12B.1 | ||||||||
| Molecular_name | Y71A12B.1a | ||||||||
| Y71A12B.1a.1 | |||||||||
| CE24592 | |||||||||
| Y71A12B.1c | |||||||||
| CE47695 | |||||||||
| Y71A12B.1c.1 | |||||||||
| Other_name | CELE_Y71A12B.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rps-6 | ||||||||
| DB_info | Database | AceView | gene | 1O545 | |||||
| WormQTL | gene | WBGene00004475 | |||||||
| WormFlux | gene | WBGene00004475 | |||||||
| NDB | locus_tag | CELE_Y71A12B.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004475|UniProtKB=Q9NEN6 | |||||||
| family | PTHR11502 | ||||||||
| NCBI | gene | 173260 | |||||||
| RefSeq | protein | NM_001276653.3 | |||||||
| NM_061034.9 | |||||||||
| SwissProt | UniProtAcc | Q9NEN6 | |||||||
| TrEMBL | UniProtAcc | I2HAF9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NEN6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (20) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps6 using blastP | ||||||||
| Strain | WBStrain00054762 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | rps-6 encodes a small (40S) ribosomal subunit S6 protein; loss of rps-6 activity in adult animals extends lifespan. | Paper_evidence | WBPaper00029008 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in cytoplasm; nucleolus; and ribosome. Predicted to be part of small-subunit processome. Is an ortholog of human RPS6 (ribosomal protein S6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71A12B.1a | |||||||
| Y71A12B.1c | |||||||||
| Corresponding_CDS_history | Y71A12B.1b:wp271 | ||||||||
| Corresponding_transcript | Y71A12B.1a.1 | ||||||||
| Y71A12B.1c.1 | |||||||||
| Other_sequence (384) | |||||||||
| Associated_feature | WBsf643821 | ||||||||
| WBsf657052 | |||||||||
| WBsf657053 | |||||||||
| WBsf981136 | |||||||||
| WBsf218760 | |||||||||
| WBsf218761 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1018041 | ||||||||
| Expr1032278 | |||||||||
| Expr1161546 | |||||||||
| Expr2015530 | |||||||||
| Expr2033765 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction (247) | |||||||||
| Map_info | Map | I | Position | 22.3884 | Error | 0.017058 | |||
| Positive | Positive_clone | Y71A12B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
