WormBase Tree Display for Gene: WBGene00004489
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| WBGene00004489 | SMap | S_parent | Sequence | Y105E8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-20 | |||||||
| Sequence_name | Y105E8A.16 | ||||||||
| Molecular_name | Y105E8A.16 | ||||||||
| Y105E8A.16.1 | |||||||||
| CE29835 | |||||||||
| Other_name | Y105E8E.s | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y105E8A.16 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rps-20 | ||||||||
| DB_info | Database | AceView | gene | 1P60 | |||||
| WormQTL | gene | WBGene00004489 | |||||||
| WormFlux | gene | WBGene00004489 | |||||||
| NDB | locus_tag | CELE_Y105E8A.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004489|UniProtKB=Q8WQA8 | |||||||
| family | PTHR11700 | ||||||||
| NCBI | gene | 173309 | |||||||
| RefSeq | protein | NM_170948.8 | |||||||
| TREEFAM | TREEFAM_ID | TF300222 | |||||||
| TrEMBL | UniProtAcc | Q8WQA8 | |||||||
| UniProt_GCRP | UniProtAcc | Q8WQA8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (17) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps20 using blastP | ||||||||
| Strain | WBStrain00055661 | ||||||||
| WBStrain00055660 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP1732 | ||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | rps-20 encodes a small ribosomal subunit S20 protein. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS20 (ribosomal protein S20). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y105E8A.16 | |||||||
| Corresponding_transcript | Y105E8A.16.1 | ||||||||
| Other_sequence (240) | |||||||||
| Associated_feature | WBsf649762 | ||||||||
| WBsf649763 | |||||||||
| WBsf663841 | |||||||||
| WBsf665124 | |||||||||
| WBsf981142 | |||||||||
| WBsf220614 | |||||||||
| WBsf220615 | |||||||||
| WBsf220616 | |||||||||
| Experimental_info | RNAi_result (33) | ||||||||
| Expr_pattern | Expr1010400 | ||||||||
| Expr1032292 | |||||||||
| Expr1158753 | |||||||||
| Expr2015515 | |||||||||
| Expr2033750 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (200) | |||||||||
| Map_info | Map | I | Position | 25.7186 | Error | 0.002491 | |||
| Positive | Positive_clone | Y105E8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y105E8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035228 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065181 | |||||||||
| Remark | rps-20 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rps20 using blastP". BlastP of C. elegans with sp|P38701|RS20_YEAST gives the hit Y105E8A.16 | Person_evidence | WBPerson567 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
