WormBase Tree Display for Gene: WBGene00004776
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WBGene00004776 | SMap | S_parent | Sequence | F59C12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ser-1 | Person_evidence | WBPerson32 | |||||
Sequence_name | F59C12.2 | ||||||||
Molecular_name | F59C12.2a | ||||||||
F59C12.2a.1 | |||||||||
CE28481 | |||||||||
F59C12.2b | |||||||||
CE38526 | |||||||||
F59C12.2b.1 | |||||||||
Other_name | 5-HT2CeL | Accession_evidence | EMBL | AF031414 | |||||
AF031415 | |||||||||
5-HT2CeS | Accession_evidence | EMBL | AF031414 | ||||||
AF031415 | |||||||||
CELE_F59C12.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | ser-1 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00004776 | |||||
WormFlux | gene | WBGene00004776 | |||||||
NDB | locus_tag | CELE_F59C12.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004776|UniProtKB=O17470 | |||||||
family | PTHR24247 | ||||||||
NCBI | gene | 181716 | |||||||
RefSeq | protein | NM_001029557.5 | |||||||
NM_001029558.5 | |||||||||
TREEFAM | TREEFAM_ID | TF351745 | |||||||
TrEMBL | UniProtAcc | O17470 | |||||||
G5ECV2 | |||||||||
UniProt_GCRP | UniProtAcc | O17470 | |||||||
OMIM | gene | 182135 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ser | ||||||||
Allele (103) | |||||||||
Legacy_information | [Leon Avery] ad1675 deletes bp 3708-5921 of F59C12.2. This is predicted to remove the C terminal cytoplasmic tail, but could still leave the protein functional. ad1675 mutants have no obvious phenotype. | ||||||||
Strain (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (29) | |||||||||
Ortholog (20) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | ser-1 encodes a putative ortholog of mammalian 5-HT2 metabotropicserotonin receptors; SER-1 is required in both vulval muscle and neuronsfor the stimulation of egg-laying by serotonin (5-HT), but is completelydispensable for stimulation by the uptake inhibitor fluoxetine, andmostly dispensable for stimulation by the tricyclic antidepressantimipramine; SER-1 and SER-7 are redundantly required for normalegg-laying; SER-1 is required for normal turning during male mating, andser-1 mutants show reduced male tail curling in exogenous 5-HT, butser-1 males retain mating ability in the laboratory; SER-1 is weaklyrequired for pharyngeal pumping; SER-1 is expressed in diverse neurons(head, nerve ring, vulval, ventral cord motoneurons, tail, and manyothers), in diverse muscles (pharyngeal, vulval, and male-specificdiagonal), and in uterine cells; stimulation of heterologously expressedSER-1 induces a rise in free intracellular calcium; SER-1 has lowaffinity for 5-HT, and a mixture of pharmacological similarities tomammalian 5-HT1 and 5-HT2 receptors; SER-1 is stimulated byalpha-methyl-5HT, and probably antagonized by methiotheptin; SER-1 iscoexpressed with MPZ-1, has a PDZ binding motif (ETFL) that aids itssignalling, and binds PDZ domain 10 of MPZ-1 in vitro; SER-1'sstimulation of egg-laying is impeded by mpz-1(RNAi), if and only ifSER-1's ETFL motif is intact; mod-1;ser-1 double mutants subtly overbendtheir bodies while moving backward. | Paper_evidence (11) | ||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 20 Dec 2006 00:00:00 | ||||||||
Automated_description | Enables G protein-coupled serotonin receptor activity and serotonin binding activity. Involved in several processes, including reproductive behavior; response to heat; and signal transduction. Located in plasma membrane. Expressed in several structures, including egg-laying apparatus; intestine; neurons; pharyngeal muscle cell; and somatic nervous system. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; anorexia nervosa; and obsessive-compulsive disorder. Is an ortholog of human HTR2A (5-hydroxytryptamine receptor 2A) and HTR2B (5-hydroxytryptamine receptor 2B). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (16) | ||||||||
Molecular_info | Corresponding_CDS | F59C12.2a | |||||||
F59C12.2b | |||||||||
Corresponding_CDS_history | F59C12.2:wp142 | ||||||||
Corresponding_transcript | F59C12.2a.1 | ||||||||
F59C12.2b.1 | |||||||||
Other_sequence (19) | |||||||||
Associated_feature (19) | |||||||||
Experimental_info | RNAi_result (12) | ||||||||
Expr_pattern (16) | |||||||||
Drives_construct (14) | |||||||||
Construct_product | WBCnstr00007173 | ||||||||
WBCnstr00007174 | |||||||||
WBCnstr00007175 | |||||||||
WBCnstr00007176 | |||||||||
WBCnstr00012947 | |||||||||
WBCnstr00017194 | |||||||||
WBCnstr00022944 | |||||||||
WBCnstr00022950 | |||||||||
WBCnstr00023051 | |||||||||
WBCnstr00035395 | |||||||||
Microarray_results (26) | |||||||||
Expression_cluster (88) | |||||||||
Interaction (94) | |||||||||
Anatomy_function | WBbtf0587 | ||||||||
WBbtf0588 | |||||||||
Map_info | Map | X | Position | 24.0554 | Error | 0.000961 | |||
Positive | Positive_clone | F59C12 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4654 | |||||||
5309 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003432 | ||||||||
WBPaper00006132 | |||||||||
WBPaper00006180 | |||||||||
WBPaper00015498 | |||||||||
WBPaper00017054 | |||||||||
WBPaper00017357 | |||||||||
WBPaper00023482 | |||||||||
WBPaper00023951 | |||||||||
WBPaper00023953 | |||||||||
WBPaper00023956 | |||||||||
WBPaper00024420 | |||||||||
WBPaper00024527 | |||||||||
WBPaper00025145 | |||||||||
WBPaper00025670 | |||||||||
WBPaper00025721 | |||||||||
WBPaper00025761 | |||||||||
WBPaper00026263 | |||||||||
WBPaper00026843 | |||||||||
WBPaper00028135 | |||||||||
WBPaper00028370 | |||||||||
WBPaper00028762 | |||||||||
WBPaper00028865 | |||||||||
WBPaper00028900 | |||||||||
WBPaper00029150 | |||||||||
WBPaper00029300 | |||||||||
WBPaper00030234 | |||||||||
WBPaper00030761 | |||||||||
WBPaper00031241 | |||||||||
WBPaper00031564 | |||||||||
WBPaper00031694 | |||||||||
WBPaper00031834 | |||||||||
WBPaper00031915 | |||||||||
WBPaper00032196 | |||||||||
WBPaper00032335 | |||||||||
WBPaper00032345 | |||||||||
WBPaper00032677 | |||||||||
WBPaper00032881 | |||||||||
WBPaper00033168 | |||||||||
WBPaper00033181 | |||||||||
WBPaper00033950 | |||||||||
WBPaper00034151 | |||||||||
WBPaper00034152 | |||||||||
WBPaper00034156 | |||||||||
WBPaper00034162 | |||||||||
WBPaper00036766 | |||||||||
WBPaper00037314 | |||||||||
WBPaper00038382 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00039252 | |||||||||
WBPaper00039428 | |||||||||
WBPaper00040026 | |||||||||
WBPaper00040144 | |||||||||
WBPaper00042584 | |||||||||
WBPaper00043908 | |||||||||
WBPaper00046292 | |||||||||
WBPaper00046594 | |||||||||
WBPaper00047603 | |||||||||
WBPaper00048035 | |||||||||
WBPaper00048542 | |||||||||
WBPaper00048770 | |||||||||
WBPaper00049131 | |||||||||
WBPaper00049556 | |||||||||
WBPaper00050796 | |||||||||
WBPaper00052970 | |||||||||
WBPaper00053165 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00055659 | |||||||||
WBPaper00055798 | |||||||||
WBPaper00060134 | |||||||||
WBPaper00060405 | |||||||||
WBPaper00060619 | |||||||||
WBPaper00060921 | |||||||||
WBPaper00060976 | |||||||||
WBPaper00061589 | |||||||||
WBPaper00062298 | |||||||||
WBPaper00062495 | |||||||||
WBPaper00062563 | |||||||||
WBPaper00062573 | |||||||||
WBPaper00063580 | |||||||||
WBPaper00064144 | |||||||||
WBPaper00064652 | |||||||||
WBPaper00065261 | |||||||||
WBPaper00065325 | |||||||||
WBPaper00065366 | |||||||||
Remark | sca-1 has sometimes been used to refer to his gene, but this is not correct as sca-1 is a SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) | CGC_data_submission | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |