WormBase Tree Display for Gene: WBGene00004855

WBGene00004855 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 1
    Name: CGC_name: sma-1 Person_evidence: WBPerson261
      Sequence_name: R31.1
      Molecular_name (18)
      Other_name: sma-7
        sma1 Accession_evidence: EMBL AF053496
        CELE_R31.1 Accession_evidence: NDB BX284605
      Public_name: sma-1
    DB_info: Database: AceView gene 5M395
        WormQTL gene WBGene00004855
        WormFlux gene WBGene00004855
        NDB locus_tag CELE_R31.1
        Panther gene CAEEL|WormBase=WBGene00004855|UniProtKB=G5EFW3
          family PTHR23167
        NCBI gene 179629
        RefSeq protein NM_001392621.1
            NM_001136431.4
            NM_001269453.3
            NM_171544.7
            NM_001373124.2
            NM_001269454.3
        TREEFAM TREEFAM_ID TF313446
        TrEMBL UniProtAcc A0A486WVF0
            A0A486WUT8
            G5EC35
            G5EG97
            G5EBH3
            G5EFW3
        UniProt_GCRP UniProtAcc G5EFW3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (13)
  Molecular_info: Corresponding_CDS: R31.1a
      R31.1b
      R31.1c
      R31.1d
      R31.1e
      R31.1f
    Corresponding_CDS_history: R31.1:wp51
      R31.1:wp182
    Corresponding_transcript: R31.1a.1
      R31.1b.1
      R31.1c.1
      R31.1d.1
      R31.1e.1
      R31.1f.1
    Other_sequence (79)
    Associated_feature (52)
  Experimental_info: RNAi_result: WBRNAi00052022 Inferred_automatically: RNAi_primary
      WBRNAi00113741 Inferred_automatically: RNAi_primary
      WBRNAi00078483 Inferred_automatically: RNAi_primary
      WBRNAi00064314 Inferred_automatically: RNAi_primary
      WBRNAi00026129 Inferred_automatically: RNAi_primary
      WBRNAi00081111 Inferred_automatically: RNAi_primary
      WBRNAi00113745 Inferred_automatically: RNAi_primary
      WBRNAi00082909 Inferred_automatically: RNAi_primary
      WBRNAi00009083 Inferred_automatically: RNAi_primary
      WBRNAi00083130 Inferred_automatically: RNAi_primary
    Expr_pattern (13)
    Drives_construct: WBCnstr00001985
      WBCnstr00004896
      WBCnstr00011804
      WBCnstr00012053
      WBCnstr00012054
      WBCnstr00014750
      WBCnstr00014751
      WBCnstr00035355
    Construct_product: WBCnstr00004896
      WBCnstr00011804
      WBCnstr00035355
    Antibody: WBAntibody00000427
      WBAntibody00001017
      WBAntibody00001018
      WBAntibody00003005
      WBAntibody00003006
    Microarray_results (25)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00037047:aging_accelerated_insoluble_protein
      WBPaper00037047:insoluble_protein
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:pharyngeal-muscle_embryo_enriched
      WBPaper00038289:oocyte_protein
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040285:H2S_12hr_downregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044616:alg-3-4_downregulated_gene
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_upregulated_Day5
      WBPaper00044746:aging_upregulated_HeatShock
      WBPaper00045521:Spermatogenic
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046691:AB_enriched
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048923:Aging_regulated
      WBPaper00048988:daf-2(e1370)_daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050094:mes-2(bn11)_upregulated
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050182:lmn-1(L535P)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053289:DREAM-target
      WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053615:SMO-1_target
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
      WBPaper00055969:electromagnetic-field_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057288:Cold_downregulated_protein
      WBPaper00058948:PA14_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061340:hyp7_AB_lineage
      WBPaper00061340:hyp7_C_lineage
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:P_cell
      WBPaper00061340:T
      WBPaper00061340:Tail_hypodermis
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061478:pie-1(ne4433)_upregulated
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00061527:uggt-1_21889-tag-320_20312
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061818:ELKS-1_interacting
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_upregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064201:SNA-3_interacting
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065158:AFD_enriched
      WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065841:3_4
      WBPaper00065841:11_0
      WBPaper00065841:13_1
      WBPaper00065841:23_0
      WBPaper00065841:30_1
      WBPaper00065841:30_4
      WBPaper00065841:79_1
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4386_cluster_6_3
      cgc4489_group_14
      WBPaper00025032:cluster_2
      WBPaper00025032:cluster_36
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00029437:dcr-1_upregulated
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00031832:slr-2_regulated
      WBPaper00032165:A_to_C_transit_increased
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00038304:octr-1_regulated
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040823:alg-1(gk214)_downregulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction: WBInteraction000001747
      WBInteraction000001819
      WBInteraction000002081
      WBInteraction000002224
      WBInteraction000002274
      WBInteraction000003024
      WBInteraction000008612
      WBInteraction000009579
      WBInteraction000028536
      WBInteraction000028948
      WBInteraction000029297
      WBInteraction000030995
      WBInteraction000031720
      WBInteraction000036467
      WBInteraction000042059
      WBInteraction000042280
      WBInteraction000046698
      WBInteraction000049357
      WBInteraction000050383
      WBInteraction000051821
      WBInteraction000142063
      WBInteraction000142064
      WBInteraction000149162
      WBInteraction000149177
      WBInteraction000165796
      WBInteraction000166079
      WBInteraction000166416
      WBInteraction000191520
      WBInteraction000196885
      WBInteraction000202348
      WBInteraction000202366
      WBInteraction000202367
      WBInteraction000207610
      WBInteraction000212964
      WBInteraction000239878
      WBInteraction000249614
      WBInteraction000256574
      WBInteraction000259686
      WBInteraction000281316
      WBInteraction000291771
      WBInteraction000352622
      WBInteraction000375645
      WBInteraction000387079
      WBInteraction000393290
      WBInteraction000405163
      WBInteraction000427834
      WBInteraction000428561
      WBInteraction000447619
      WBInteraction000500863
      WBInteraction000502109
      WBInteraction000514362
      WBInteraction000543136
      WBInteraction000546370
      WBInteraction000546371
      WBInteraction000546372
      WBInteraction000546373
      WBInteraction000546374
      WBInteraction000546375
      WBInteraction000546376
      WBInteraction000546377
      WBInteraction000546378
      WBInteraction000546379
      WBInteraction000546380
      WBInteraction000546381
      WBInteraction000546382
      WBInteraction000546383
      WBInteraction000546384
      WBInteraction000551434
      WBInteraction000553038
      WBInteraction000555971
      WBInteraction000559436
      WBInteraction000569206
      WBInteraction000578324
      WBInteraction000578670
      WBInteraction000583121
      WBInteraction000584410
      WBInteraction000585543
      WBInteraction000586648
    WBProcess: WBbiopr:00000025
  Map_info: Map: V Position: 3.53974 Error: 0.002879
    Well_ordered
    Positive: Inside_rearr: nDf42
      Positive_clone: C10C2
        R31 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: eDf1
        nDf31
      Negative_clone: K12G11 Person_evidence: WBPerson415
        R07A10 Person_evidence: WBPerson415
    Mapping_data: 2_point (12)
      Multi_point (99)
      Pos_neg_data (12)
    Landmark_gene
  Reference (139)
  Remark: Data extracted from McKeown et al. (1998)
  Method: Gene