WormBase Tree Display for Gene: WBGene00004855
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WBGene00004855 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sma-1 | Person_evidence | WBPerson261 | |||||
Sequence_name | R31.1 | ||||||||
Molecular_name (18) | |||||||||
Other_name | sma-7 | ||||||||
sma1 | Accession_evidence | EMBL | AF053496 | ||||||
CELE_R31.1 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | sma-1 | ||||||||
DB_info | Database | AceView | gene | 5M395 | |||||
WormQTL | gene | WBGene00004855 | |||||||
WormFlux | gene | WBGene00004855 | |||||||
NDB | locus_tag | CELE_R31.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004855|UniProtKB=G5EFW3 | |||||||
family | PTHR23167 | ||||||||
NCBI | gene | 179629 | |||||||
RefSeq | protein | NM_001392621.1 | |||||||
NM_001136431.4 | |||||||||
NM_001269453.3 | |||||||||
NM_171544.7 | |||||||||
NM_001373124.2 | |||||||||
NM_001269454.3 | |||||||||
TREEFAM | TREEFAM_ID | TF313446 | |||||||
TrEMBL | UniProtAcc | A0A486WVF0 | |||||||
A0A486WUT8 | |||||||||
G5EC35 | |||||||||
G5EG97 | |||||||||
G5EBH3 | |||||||||
G5EFW3 | |||||||||
UniProt_GCRP | UniProtAcc | G5EFW3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sma | ||||||||
Reference_allele | WBVar00142924 | ||||||||
Allele (240) | |||||||||
Possibly_affected_by | WBVar02158606 | ||||||||
Legacy_information | e30 : short round-headed especially in early larvae; adults have slight rolling tendency. ES3. NA8 (e656 e2075 (pka sma-7 ME2) etc.). | ||||||||
See sma-1. | |||||||||
See also e30, e656, e1160, e1426, e2075, e2089, e2090, n504 | |||||||||
[C.elegansII] e30 : short round-headed, especially in early larvae; adults have slight rolling tendency. ES3. OA>10: e656, e2075(pka sma-7, ME2), e1160, e2090, n504, etc. Cloned: encodes predicted cytoskeletal protein. [Brenner 1974; AZ] | |||||||||
[McKeown C] ru18 probable null, L1 body length reduced by 44% (e30 by 39%), slow embryonic elongation, some sterility. Encodes 4063 aa betaH-spectrin homolog. ru18 has 1.8 kb deletion, no protein detected by antibody. Predicted gene R31.1. | |||||||||
Strain (18) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (33) | |||||||||
Contained_in_operon | CEOP5541 | ||||||||
Ortholog (41) | |||||||||
Paralog (14) | |||||||||
Structured_description | Concise_description | sma-1 encodes a beta-H spectrin; during embryonic morphogenesis, SMA-1 activity is required for a normal rate of elongation and thus, for a wild-type body length upon hatching; in addition, SMA-1 is required for proper morphogenesis of the pharynx and the excretory cell; sma-1 mRNA transcripts are first detected in hypodermal cells at the beginning of embryonic morphogenesis with later expression visible in the developing pharynx, intestine, and excretory cell. | Paper_evidence | WBPaper00003094 | |||||
WBPaper00003721 | |||||||||
WBPaper00040399 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 16 Nov 2011 00:00:00 | ||||||||
Automated_description | Predicted to enable actin filament binding activity. Involved in several processes, including pharyngeal gland morphogenesis; positive regulation of organ growth; and regulation of anatomical structure size. Located in apical plasma membrane; cytoplasm; and nucleus. Expressed in several structures, including excretory cell; hermaphrodite gonad; neurons; pharynx; and vulval cell. Is an ortholog of human SPTBN5 (spectrin beta, non-erythrocytic 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R31.1a | |||||||
R31.1b | |||||||||
R31.1c | |||||||||
R31.1d | |||||||||
R31.1e | |||||||||
R31.1f | |||||||||
Corresponding_CDS_history | R31.1:wp51 | ||||||||
R31.1:wp182 | |||||||||
Corresponding_transcript | R31.1a.1 | ||||||||
R31.1b.1 | |||||||||
R31.1c.1 | |||||||||
R31.1d.1 | |||||||||
R31.1e.1 | |||||||||
R31.1f.1 | |||||||||
Other_sequence (79) | |||||||||
Associated_feature (52) | |||||||||
Experimental_info | RNAi_result | WBRNAi00052022 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113741 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078483 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064314 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026129 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081111 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113745 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082909 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009083 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083130 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00001985 | ||||||||
WBCnstr00004896 | |||||||||
WBCnstr00011804 | |||||||||
WBCnstr00012053 | |||||||||
WBCnstr00012054 | |||||||||
WBCnstr00014750 | |||||||||
WBCnstr00014751 | |||||||||
WBCnstr00035355 | |||||||||
Construct_product | WBCnstr00004896 | ||||||||
WBCnstr00011804 | |||||||||
WBCnstr00035355 | |||||||||
Antibody | WBAntibody00000427 | ||||||||
WBAntibody00001017 | |||||||||
WBAntibody00001018 | |||||||||
WBAntibody00003005 | |||||||||
WBAntibody00003006 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (192) | |||||||||
Interaction | WBInteraction000001747 | ||||||||
WBInteraction000001819 | |||||||||
WBInteraction000002081 | |||||||||
WBInteraction000002224 | |||||||||
WBInteraction000002274 | |||||||||
WBInteraction000003024 | |||||||||
WBInteraction000008612 | |||||||||
WBInteraction000009579 | |||||||||
WBInteraction000028536 | |||||||||
WBInteraction000028948 | |||||||||
WBInteraction000029297 | |||||||||
WBInteraction000030995 | |||||||||
WBInteraction000031720 | |||||||||
WBInteraction000036467 | |||||||||
WBInteraction000042059 | |||||||||
WBInteraction000042280 | |||||||||
WBInteraction000046698 | |||||||||
WBInteraction000049357 | |||||||||
WBInteraction000050383 | |||||||||
WBInteraction000051821 | |||||||||
WBInteraction000142063 | |||||||||
WBInteraction000142064 | |||||||||
WBInteraction000149162 | |||||||||
WBInteraction000149177 | |||||||||
WBInteraction000165796 | |||||||||
WBInteraction000166079 | |||||||||
WBInteraction000166416 | |||||||||
WBInteraction000191520 | |||||||||
WBInteraction000196885 | |||||||||
WBInteraction000202348 | |||||||||
WBInteraction000202366 | |||||||||
WBInteraction000202367 | |||||||||
WBInteraction000207610 | |||||||||
WBInteraction000212964 | |||||||||
WBInteraction000239878 | |||||||||
WBInteraction000249614 | |||||||||
WBInteraction000256574 | |||||||||
WBInteraction000259686 | |||||||||
WBInteraction000281316 | |||||||||
WBInteraction000291771 | |||||||||
WBInteraction000352622 | |||||||||
WBInteraction000375645 | |||||||||
WBInteraction000387079 | |||||||||
WBInteraction000393290 | |||||||||
WBInteraction000405163 | |||||||||
WBInteraction000427834 | |||||||||
WBInteraction000428561 | |||||||||
WBInteraction000447619 | |||||||||
WBInteraction000500863 | |||||||||
WBInteraction000502109 | |||||||||
WBInteraction000514362 | |||||||||
WBInteraction000543136 | |||||||||
WBInteraction000546370 | |||||||||
WBInteraction000546371 | |||||||||
WBInteraction000546372 | |||||||||
WBInteraction000546373 | |||||||||
WBInteraction000546374 | |||||||||
WBInteraction000546375 | |||||||||
WBInteraction000546376 | |||||||||
WBInteraction000546377 | |||||||||
WBInteraction000546378 | |||||||||
WBInteraction000546379 | |||||||||
WBInteraction000546380 | |||||||||
WBInteraction000546381 | |||||||||
WBInteraction000546382 | |||||||||
WBInteraction000546383 | |||||||||
WBInteraction000546384 | |||||||||
WBInteraction000551434 | |||||||||
WBInteraction000553038 | |||||||||
WBInteraction000555971 | |||||||||
WBInteraction000559436 | |||||||||
WBInteraction000569206 | |||||||||
WBInteraction000578324 | |||||||||
WBInteraction000578670 | |||||||||
WBInteraction000583121 | |||||||||
WBInteraction000584410 | |||||||||
WBInteraction000585543 | |||||||||
WBInteraction000586648 | |||||||||
WBProcess | WBbiopr:00000025 | ||||||||
Map_info | Map | V | Position | 3.53974 | Error | 0.002879 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | nDf42 | |||||||
Positive_clone | C10C2 | ||||||||
R31 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Negative | Outside_rearr | eDf1 | |||||||
nDf31 | |||||||||
Negative_clone | K12G11 | Person_evidence | WBPerson415 | ||||||
R07A10 | Person_evidence | WBPerson415 | |||||||
Mapping_data | 2_point (12) | ||||||||
Multi_point (99) | |||||||||
Pos_neg_data (12) | |||||||||
Landmark_gene | |||||||||
Reference (139) | |||||||||
Remark | Data extracted from McKeown et al. (1998) | ||||||||
Method | Gene |