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WormBase Tree Display for Gene: WBGene00004884

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Name Class

WBGene00004884SMapS_parentSequenceY54F10AL
IdentityVersion2
NameCGC_namesmg-6Person_evidenceWBPerson261
Sequence_nameY54F10AL.2
Molecular_nameY54F10AL.2a
Y54F10AL.2a.1
CE32984
Y54F10AL.2b
CE27003
Y54F10AL.2c
CE54156
Y54F10AL.2b.1
Y54F10AL.2c.1
Other_namemab-16
est-1
NM_065165Inferred_automaticallyRefSeq
NM_001047420Inferred_automaticallyRefSeq
NM_065164Inferred_automaticallyRefSeq
spr-8Paper_evidenceWBPaper00033013
Y54F10AL.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y54F10AL.2Accession_evidenceNDBBX284603
Public_namesmg-6
DB_infoDatabaseAceViewgene3D575
WormQTLgeneWBGene00004884
WormFluxgeneWBGene00004884
NDBlocus_tagCELE_Y54F10AL.2
PanthergeneCAEEL|WormBase=WBGene00004884|UniProtKB=Q9BL68
familyPTHR15696
NCBIgene175367
RefSeqproteinNM_065164.8
NM_001381779.2
NM_065165.9
TREEFAMTREEFAM_IDTF327119
TrEMBLUniProtAccQ9BL69
Q1T6W7
Q9BL68
UniProt_GCRPUniProtAccQ9BL68
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
210 Jan 2008 15:40:33WBPerson2970EventAcquires_mergeWBGene00001339
Name_changeOther_nameest-1
Acquires_mergeWBGene00001339
StatusLive
Gene_info (12)
Molecular_infoCorresponding_CDSY54F10AL.2a
Y54F10AL.2b
Y54F10AL.2c
Corresponding_CDS_historyY54F10AL.2c:wp275
Corresponding_transcriptY54F10AL.2a.1
Y54F10AL.2b.1
Y54F10AL.2c.1
Other_sequence (14)
Associated_feature (16)
Experimental_infoRNAi_resultWBRNAi00037482Inferred_automaticallyRNAi_primary
WBRNAi00066920Inferred_automaticallyRNAi_primary
WBRNAi00057393Inferred_automaticallyRNAi_primary
WBRNAi00057394Inferred_automaticallyRNAi_primary
WBRNAi00000862Inferred_automaticallyRNAi_primary
Expr_patternExpr7046
Expr1027614
Expr1032423
Expr1160827
Expr2015912
Expr2034145
Drives_constructWBCnstr00004051
Microarray_results (30)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037682:sma-2_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038061:aldicarb_downregulated
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045521:Oogenic
WBPaper00045571:germline-ablation_downregulated
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051558:fog-2(q71)_regulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056161:male_enriched_siRNA
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:hmc_biased
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00059174:MEG-3_interacting
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:mc2
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:trcs-2_5724-R11A8.7_17645
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064071:NHR-49_interacting
WBPaper00064122:vulva_transcriptome
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00064716:paraquat_upregulated
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00025032:cluster_11
WBPaper00025141:N2_Expressed_Genes
WBPaper00031252:AIN-1_IP_enriched
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040821:Au-NP_regulated
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00048989:N2_rapamycin_downregulated
Interaction (13)
Map_infoMapIIIPosition-12.9882Error0.268963
Well_ordered
PositivePositive_cloneY54F10ALInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_data2_point4700
6023
Multi_point1633
2037
2038
2039
5258
4846
4812
Pos_neg_data5996
Landmark_gene
Reference (48)
MethodGene