WormBase Tree Display for Gene: WBGene00004885

WBGene00004885 SMap: S_parent: Sequence: Y73B6A
  Identity: Version: 1
    Name: CGC_name: smg-7 Person_evidence: WBPerson261
      Sequence_name: Y73B6A.4
      Molecular_name: Y73B6A.4
        Y73B6A.4.1
        CE25584
      Other_name: CELE_Y73B6A.4 Accession_evidence: NDB BX284604
      Public_name: smg-7
    DB_info: Database: AceView gene 4H506
        WormQTL gene WBGene00004885
        WormFlux gene WBGene00004885
        NDB locus_tag CELE_Y73B6A.4
        Panther gene CAEEL|WormBase=WBGene00004885|UniProtKB=G5EF47
          family PTHR15696
        NCBI gene 177435
        RefSeq protein NM_068632.6
        TrEMBL UniProtAcc G5EF47
        UniProt_GCRP UniProtAcc G5EF47
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: smg
    Allele (33)
    Legacy_information: [Cali BM] r1131 suppresses unc-54(r293), tra-2(e1209), dpy-5(e61). unc-54 nonsense mRNAs accumulate. Hermaphrodites are Pvul, males are Mab.
      [C.elegansII] r1131::Tc1 : suppresses unc-54(r293), tra-2(e1209), dpy-5(e61). unc-54 nonsense mRNAs accumulate. Hermaphrodites are Pvul, males are Mab. Cloned: encodes predicted 53 kD protein with 3 tetratricopeptide repeats; 54 kD protein detected by western. In vitro and in vivo, SMG-7interacts with SMG-5. [TR]
    Complementation_data: [Cali BM] complements reference alleles of smg-1, smg-2, smg-3, smg-4, smg-5, smg-6
    Strain: WBStrain00034952
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP4192
    Ortholog (21)
    Paralog: WBGene00004884 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable telomerase RNA binding activity and telomeric DNA binding activity. Involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Located in cytoplasm and nucleus. Is an ortholog of human SMG7 (SMG7 nonsense mediated mRNA decay factor). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y73B6A.4
    Corresponding_transcript: Y73B6A.4.1
    Other_sequence (2)
    Associated_feature: WBsf230188
  Experimental_info: RNAi_result: WBRNAi00062471 Inferred_automatically: RNAi_primary
      WBRNAi00058307 Inferred_automatically: RNAi_primary
      WBRNAi00027860 Inferred_automatically: RNAi_primary
      WBRNAi00021384 Inferred_automatically: RNAi_primary
      WBRNAi00085063 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012075
      Expr1032424
      Expr1161715
      Expr2015913
      Expr2034146
    Drives_construct: WBCnstr00035341
    Construct_product: WBCnstr00035341
    Antibody: WBAntibody00000604
      WBAntibody00001564
    Microarray_results (17)
    Expression_cluster (69)
    Interaction (19)
  Map_info: Map: IV Position: 3.22044 Error: 0.001893
    Well_ordered
    Positive: Positive_clone: Y22D1
        Y73B6A Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 3150
        3151
        3152
        3153
        3154
    Landmark_gene
  Reference (25)
  Remark: allele description summarized from letter
  Method: Gene