WormBase Tree Display for Gene: WBGene00004904
expand all nodes | collapse all nodes | view schema
| WBGene00004904 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y46G5A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snf-5 | Person_evidence | WBPerson508 | |||||
| Sequence_name | Y46G5A.30 | ||||||||
| Molecular_name | Y46G5A.30 | ||||||||
| Y46G5A.30.1 | |||||||||
| CE29609 | |||||||||
| Other_name | CELE_Y46G5A.30 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | snf-5 | ||||||||
| DB_info | Database | AceView | gene | 2N152 | |||||
| WormQTL | gene | WBGene00004904 | |||||||
| WormFlux | gene | WBGene00004904 | |||||||
| NDB | locus_tag | CELE_Y46G5A.30 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004904|UniProtKB=G5EBM5 | |||||||
| family | PTHR11616 | ||||||||
| NCBI | gene | 174923 | |||||||
| RefSeq | protein | NM_064334.6 | |||||||
| SwissProt | UniProtAcc | G5EBM5 | |||||||
| TREEFAM | TREEFAM_ID | TF343150 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBM5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snf | ||||||||
| Allele (120) | |||||||||
| Strain | WBStrain00003256 | ||||||||
| WBStrain00031425 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009878 | ||||||||
| 00009879 | |||||||||
| 00009880 | |||||||||
| 00009881 | |||||||||
| 00009882 | |||||||||
| 00009883 | |||||||||
| 00009884 | |||||||||
| 00009885 | |||||||||
| 00009886 | |||||||||
| 00113313 | |||||||||
| Ortholog (70) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in plasma membrane. Expressed in amphid neurons; intestinal cell; pharyngeal neurons; and rectal gland cell. Is an ortholog of human SLC6A7 (solute carrier family 6 member 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46G5A.30 | |||||||
| Corresponding_transcript | Y46G5A.30.1 | ||||||||
| Other_sequence | CRC00335_1 | ||||||||
| CBC12928_1 | |||||||||
| Associated_feature | WBsf990241 | ||||||||
| WBsf990242 | |||||||||
| WBsf990243 | |||||||||
| WBsf224115 | |||||||||
| WBsf224116 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020658 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037139 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103596 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113687 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056689 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6985 | ||||||||
| Expr10831 | |||||||||
| Expr1014526 | |||||||||
| Expr1160158 | |||||||||
| Expr2015949 | |||||||||
| Expr2034184 | |||||||||
| Drives_construct | WBCnstr00003731 | ||||||||
| WBCnstr00017759 | |||||||||
| WBCnstr00035332 | |||||||||
| Construct_product | WBCnstr00035332 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (236) | |||||||||
| Interaction | WBInteraction000328578 | ||||||||
| WBInteraction000397080 | |||||||||
| WBInteraction000415505 | |||||||||
| WBInteraction000416361 | |||||||||
| WBInteraction000428796 | |||||||||
| WBInteraction000431852 | |||||||||
| WBInteraction000444460 | |||||||||
| WBInteraction000464171 | |||||||||
| WBInteraction000466365 | |||||||||
| WBInteraction000472122 | |||||||||
| Map_info | Map | II | Position | 11.9968 | Error | 0.065961 | |||
| Positive | Positive_clone | Y46G5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4674 | |||||||
| 4673 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015781 | ||||||||
| WBPaper00024033 | |||||||||
| WBPaper00025141 | |||||||||
| WBPaper00042235 | |||||||||
| WBPaper00043908 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055920 | |||||||||
| WBPaper00061483 | |||||||||
| Remark | Sequence connection from [Rand JB] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
