WormBase Tree Display for Gene: WBGene00004912
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| WBGene00004912 | SMap | S_parent | Sequence | T08A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sng-1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | T08A9.3 | ||||||||
| Molecular_name | T08A9.3 | ||||||||
| T08A9.3.1 | |||||||||
| CE21167 | |||||||||
| Other_name | sng1 | Accession_evidence | EMBL | AF079373 | |||||
| CELE_T08A9.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | sng-1 | ||||||||
| DB_info | Database | AceView | gene | XH947 | |||||
| WormQTL | gene | WBGene00004912 | |||||||
| WormFlux | gene | WBGene00004912 | |||||||
| NDB | locus_tag | CELE_T08A9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004912|UniProtKB=O76735 | |||||||
| family | PTHR10838 | ||||||||
| NCBI | gene | 180995 | |||||||
| RefSeq | protein | NM_076838.6 | |||||||
| SwissProt | UniProtAcc | O76735 | |||||||
| TREEFAM | TREEFAM_ID | TF320995 | |||||||
| UniProt_GCRP | UniProtAcc | O76735 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sng | ||||||||
| Allele (47) | |||||||||
| Legacy_information | [Nonet M] 30% sequence identity to vertebrate synaptogyrin. Expressed in nervous system, possible synapse marker. Predicted gene T08A9.3 | ||||||||
| Strain | WBStrain00029051 | ||||||||
| WBStrain00031340 | |||||||||
| WBStrain00003813 | |||||||||
| WBStrain00055741 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038690 | ||||||||
| 00038691 | |||||||||
| 00038692 | |||||||||
| 00038693 | |||||||||
| 00038694 | |||||||||
| 00038695 | |||||||||
| 00038696 | |||||||||
| 00038697 | |||||||||
| 00113320 | |||||||||
| Ortholog (45) | |||||||||
| Structured_description | Concise_description | sng-1 encodes the C. elegans synaptogyrin ortholog, a vertebrate integral membrane synaptic vesicle protein; loss-of-function mutations in sng-1 result in no obvious defects in synaptogenesis or neuronal activity, suggesting that SNG-1 is likely required for more subtle neuronal functions; SNG-1::GFP reporters are expressed throughout the nervous system in neurons in the dorsal and ventral nerve cords, as well as the anterior nerve ring; SNG-1 colocalizes with the synaptic vesicle component SNT-1. | Paper_evidence | WBPaper00003641 | |||||
| WBPaper00004838 | |||||||||
| WBPaper00027627 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 29 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in regulation of exocytosis and synaptic vesicle transport. Located in synaptic vesicle. Expressed in muscle cell and nervous system. Is an ortholog of human SYNGR1 (synaptogyrin 1); SYNGR2 (synaptogyrin 2); and SYNGR4 (synaptogyrin 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T08A9.3 | |||||||
| Corresponding_transcript | T08A9.3.1 | ||||||||
| Other_sequence | AE04020 | ||||||||
| AYC02272_1 | |||||||||
| FC554966.1 | |||||||||
| JI175348.1 | |||||||||
| ACC08727_1 | |||||||||
| Associated_feature | WBsf662963 | ||||||||
| WBsf1005808 | |||||||||
| WBsf1023226 | |||||||||
| WBsf235915 | |||||||||
| WBsf235916 | |||||||||
| WBsf235917 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052824 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018418 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027778 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089515 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct (13) | |||||||||
| Construct_product (19) | |||||||||
| Antibody | WBAntibody00000400 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (159) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | X | Position | -1.75575 | Error | 0.002167 | |||
| Positive | Positive_clone | T08A9 | Person_evidence | WBPerson451 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4679 | |||||||
| 4948 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (25) | |||||||||
| Remark | Predicted splicing incorrect (10/97) | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
