WormBase Tree Display for Gene: WBGene00004950
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| WBGene00004950 | SMap | S_parent | Sequence | F40E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sox-3 | Person_evidence | WBPerson490 | |||||
| Sequence_name | F40E10.2 | ||||||||
| Molecular_name | F40E10.2 | ||||||||
| F40E10.2.1 | |||||||||
| CE05838 | |||||||||
| F40E10.2.2 | |||||||||
| Other_name | CELE_F40E10.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sox-3 | ||||||||
| DB_info | Database | AceView | gene | XP308 | |||||
| WormQTL | gene | WBGene00004950 | |||||||
| WormFlux | gene | WBGene00004950 | |||||||
| NDB | locus_tag | CELE_F40E10.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004950|UniProtKB=Q20201 | |||||||
| family | PTHR10270 | ||||||||
| NCBI | gene | 185534 | |||||||
| RefSeq | protein | NM_078038.6 | |||||||
| SwissProt | UniProtAcc | Q20201 | |||||||
| TREEFAM | TREEFAM_ID | TF351735 | |||||||
| UniProt_GCRP | UniProtAcc | Q20201 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sox | ||||||||
| Reference_allele | WBVar00239209 | ||||||||
| Allele (58) | |||||||||
| Strain | WBStrain00028921 | ||||||||
| WBStrain00035630 | |||||||||
| WBStrain00055553 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00004771 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004949 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015716 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001182 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001325 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | sox-3 encodes a putative HMG-box transcription factor orthologous to human SOX1 (OMIM:602148), SOX2 (OMIM:184429, mutated in syndromic anophthalmia), and SOX3 (OMIM:313430, mutated in hypopituitarism), and paralogous to SOX-2; SOX-3 is expressed in larval and adult pharynx, intestine, renal gland cells, and neurons. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00031006 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in neuron differentiation. Predicted to be located in nucleus. Expressed in head neurons and rectal epithelial cell. Is an ortholog of human SOX14 (SRY-box transcription factor 14) and SOX21 (SRY-box transcription factor 21). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40E10.2 | |||||||
| Corresponding_transcript | F40E10.2.1 | ||||||||
| F40E10.2.2 | |||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf978600 | ||||||||
| WBsf1007975 | |||||||||
| WBsf1007976 | |||||||||
| WBsf1024443 | |||||||||
| Transcription_factor | WBTranscriptionFactor000205 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00032017 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107409 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014643 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046838 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram477 | ||||||||
| Expr6007 | |||||||||
| Expr12602 | |||||||||
| Expr1022365 | |||||||||
| Expr1032464 | |||||||||
| Expr1150708 | |||||||||
| Expr2016014 | |||||||||
| Expr2034249 | |||||||||
| Drives_construct | WBCnstr00003229 | ||||||||
| WBCnstr00035309 | |||||||||
| Construct_product | WBCnstr00020693 | ||||||||
| WBCnstr00035309 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (37) | |||||||||
| Map_info | Map | X | Position | 19.9403 | Error | 0.059154 | |||
| Positive | Positive_clone | F40E10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5528 | |||||||
| 4664 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015364 | ||||||||
| WBPaper00017584 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039222 | |||||||||
| WBPaper00040964 | |||||||||
| WBPaper00047042 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
