WormBase Tree Display for Gene: WBGene00005013
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| WBGene00005013 | SMap | S_parent | Sequence | F43G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | jmjd-1.1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F43G6.6 | ||||||||
| Molecular_name | F43G6.6 | ||||||||
| F43G6.6.1 | |||||||||
| CE20788 | |||||||||
| Other_name | CELE_F43G6.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | jmjd-1.1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 30 Sep 2011 16:40:15 | WBPerson2970 | Name_change | CGC_name | jmjd-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | jmjd | ||||||||
| Allele (87) | |||||||||
| Strain | WBStrain00000428 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067953 | ||||||||
| 00067954 | |||||||||
| 00067955 | |||||||||
| 00067956 | |||||||||
| 00067957 | |||||||||
| 00067958 | |||||||||
| 00067959 | |||||||||
| 00067960 | |||||||||
| Contained_in_operon | CEOP2758 | ||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00017920 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020821 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | jmjd-1.1 encodes a PHD and JmjC domain-containing protein that is a member of a family of proteins containing members, such as jmjd-1.2 and human PHF8, with histone demethylase activity. | Paper_evidence | WBPaper00036110 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Apr 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone demethylase activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in melanoma; prostate cancer; and syndromic X-linked intellectual disability Siderius type. Is an ortholog of human KDM7A (lysine demethylase 7A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20672) | ||||
| DOID:1909 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22224) | ||||||
| DOID:0060812 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20672) | ||||||
| Molecular_info | Corresponding_CDS | F43G6.6 | |||||||
| Corresponding_transcript | F43G6.6.1 | ||||||||
| Associated_feature | WBsf989910 | ||||||||
| WBsf222201 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014891 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112536 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047212 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091483 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113489 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027915 | ||||||||
| Expr1151071 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction | WBInteraction000240534 | ||||||||
| WBInteraction000391002 | |||||||||
| WBInteraction000410988 | |||||||||
| WBInteraction000419752 | |||||||||
| WBInteraction000455929 | |||||||||
| WBInteraction000521427 | |||||||||
| WBInteraction000521429 | |||||||||
| WBInteraction000527426 | |||||||||
| Map_info | Map | II | Position | 4.05094 | Error | 0.002474 | |||
| Positive | Positive_clone | F43G6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | This gene was previously incorrectly identified as spt-1 based on an unintended error in the CGC strain data files | Curator_confirmed | WBPerson1971 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
